Publications

Reef Restoration and Adaptation

Journal Articles

Anthony KRN, Helmstedt KJ, Bay LK, Fidelman P, Hussey KE, Lundgren P, et al. (2020) Interventions to help coral reefs under global change—A complex decision challenge. PLoS ONE 15(8): e0236399. https://doi.org/10.1371/journal.pone.0236399

Bay, L. K., & Howells, E. J. (2021). Mapping the future for coral reefs. eLife, 10, e72978. https://doi.org/10.7554/eLife.72978

Condie, S. A., Bay, L. K., Harrison, H. B., & Lough, J. M. (2020). Large-scale interventions may delay decline of the Great Barrier Reef. Royal Society Open Science, 7(11), 201296. https://doi.org/10.1098/rsos.201296

McLeod IM, Hein MY, Babcock R, Bay L, Bourne DG, Cook N, et al. (2022) Coral restoration and adaptation in Australia: The first five years. PLoS ONE 17(11): e0273325. https://doi.org/10.1371/journal.pone.0273325

Bay, L. K., Gilmour, J. P., Muir, B., & Hardisty, P. E. (2023). Management approaches to conserve Australia’s marine ecosystem under climate change. Science, 381(6658), 631–636. https://doi.org/10.1126/science.adi3023

Peixoto, R.S., Voolstra, C.R., Baums, I.B. et al. The critical role of coral reef restoration in a changing world. Nat. Clim. Chang. 14, 1219–1222 (2024). https://doi.org/10.1038/s41558-024-02202-z

Risk Review

Reports

Pears, R., Dryden, J., Dungan, A., and Smith, R. (2025) Reef Restoration and Adaptation Program – Intervention risk assessment of the Pilot Deployments Program. Australian Institute of Marine Science, Townsville (pp93).

Coral Reef Biodiversity Credits and Nature Markets

Journal Articles

Pratchett, M. S., McWilliam, M. J., Koenig, K., Wilson, S. K., Anthony, K. R. N., Ferrari, R., Iwanaga, T., Heneghan, R. F., Helmstedt, K. J., Crocker, R., Matthews, S. A., Tebbett, S. B., & Robillot, C. (2026). Operationalizing biodiversity credits to catalyze coral reef management and investment. One Earth. Advance online publication. https://doi.org/10.1016/j.oneear.2026.101715

Ecological Intelligence for Reef Restoration

Journal Article, Theses and Book Chapters

Ferrari, R., Lachs, L., Pygas, D. R., Humanes, A., Sommer, B., Figueira, W. F., Edwards, A. J., Bythell, J. C., & Guest, J. R. (2021). Photogrammetry as a tool to improve ecosystem restoration. Trends in Ecology & Evolution, 36(12), 1093–1101. https://doi.org/10.1016/j.tree.2021.07.004

Riginos, C., & Beger, M. (2021). Incorporating genetic measures of connectivity and adaptation in marine spatial planning for corals. In C. R. Voolstra & R. B. Ramos (Eds.), Coral reef conservation and restoration in the omics age (pp. 15–35). Springer. Incorporating Genetic Measures of Connectivity and Adaptation in Marine Spatial Planning for Corals | SpringerLink 

Lachs, L., Humanes, A., Pygas, D. R., Bythell, J. C., Mumby, P. J., Ferrari, R., Figueira, W. F., Beauchamp, E., East, H. K., Edwards, A. J., Golbuu, Y., Martinez, H. M., Sommer, B., van der Steeg, E., & Guest, J. R. (2023). No apparent trade-offs associated with heat tolerance in a reef-building coral. Communications Biology, 6, Article 400. https://doi.org/10.1038/s42003-023-04758-6

Meziere, Z., Popovic, I., Prata, K., Ryan, I., Pandolfi, J., & Riginos, C. (2024). Exploring coral speciation: Multiple sympatric Stylophora pistillata taxa along a divergence continuum on the Great Barrier Reef. Evolutionary Applications, 17(1), e13644. https://doi.org/10.1111/eva.13644

Buccheri, E., Ricardo, G. F., Babcock, R. C., Mumby, P. J., & Doropoulos, C. (2023). Fertilisation kinetics among common Indo-Pacific broadcast spawning corals with distinct and shared functional traits. Coral Reefs, 42(6), 1351–1363. https://doi.org/10.1007/s00338-023-02431-2

Álvarez-Noriega, M., Marrable, I., Noonan, S. H. C., Barneche, D. R., & Ortiz, J. C. (2023). Highly conserved thermal performance strategies may limit adaptive potential in corals. Proceedings of the Royal Society B: Biological Sciences, 290(1994), 20221703. https://doi.org/10.1098/rspb.2022.1703

Fabricius, K. E., Crossman, K., Jonker, M., Mongin, M., & Thompson, A. (2023). Macroalgal cover on coral reefs: Spatial and environmental predictors, and decadal trends in the Great Barrier Reef. PLOS ONE, 18(1), Article e0279699. https://doi.org/10.1371/journal.pone.0279699

Richards, T. J., McGuigan, K., Aguirre, J. D., Humanes, A., Bozec, Y.-M., Mumby, P. J., & Riginos, C. (2023). Moving beyond heritability in the search for coral adaptive potential. Global Change Biology, 29(6), 1569–1581. https://doi.org/10.1111/gcb.16719x

Wolfe, K. M., Boström‐Einarsson, L., McLeod, I. M., & Suggett, D. J. (2023). Hidden biodiversity in coral rubble: A hierarchical structuring approach reveals the value of microhabitats for reef restoration. Ecological Monographs, 93(3), Article e1586. https://doi.org/10.1002/ecm.1586  

Burgo, M., & Hoey, A. (2024). The Changing Focus of Coral-Macrophyte Interactions: A Review of Four Decades of Research. In P. A. Todd & B. D. Russell (Eds.), Oceanography and Marine Biology: An Annual Review (pp. 267–302). CRC Press. https://doi.org/10.1201/9781003477518-7

Remmers, T., Grech, A., Roelfsema, C., Gordon, S., Lechene, M., & Ferrari, R. (2024). Close-range underwater photogrammetry for coral reef ecology: A systematic literature review. Coral Reefs, 43(1), 35–52. https://doi.org/10.1007/s00338-023-02445-w

Lechene, M. A. A., Figueira, W. F., Murray, N. J., Aston, E. A., Gordon, S. E., & Ferrari, R. (2024). Evaluating error sources to improve precision in the co-registration of underwater 3D models. Ecological Informatics, 81, 102632. https://doi.org/10.1016/j.ecoinf.2024.102632

Webber, K., Fabricius, K., Wilson, S. K., & Hoey, A. S. (2024). The influence of Sargassum biomass and thallus density on the recruitment of coral reef fishes. Coral Reefs, 43, 687–699. https://doi.org/10.1007/s00338-024-02494-9

Fabricius, K. E., Cooley, S. R., Golbuu, Y., Riginos, C., Gonzalez-Rivero, M., Heron, S. F., Mead, D., Cinner, J., & Schaffelke, B. (2024). Research priorities to support coral reefs during rapid climate change. PLOS Climate, 3(7), e0000435. https://doi.org/10.1371/journal.pclm.0000435

Martin, C. C., McClure, E. C., Webber, K., Burgo, M., & Hoey, A. S. (2024). Utilisation of macroalgal habitats by juvenile rabbitfishes on an inshore reef. Coral Reefs, 43, 1843–1855. https://doi.org/10.1007/s00338-024-02581-x

Álvarez-Noriega, M., Ortiz, J. C., Ceccarelli, D. M., Emslie, M. J., Fabricius, K. E., Jonker, M. J., Puotinen, M., Robson, B. J., Roelfsema, C. M., Sinclair-Taylor, T. H., & Ferrari, R. (2025). Spatial variation in upper limits of coral cover on the Great Barrier Reef. Global Ecology and Biogeography, 34(1), e13928. https://doi.org/10.1111/geb.13928            

Riginos, C., Popovic, I., Meziere, Z., Garcia, V., Byrne, I., Howitt, S. M., Ishida, H., Bairos-Novak, K., Humanes, A., Scharfenstein, H., Richards, T., Briggs, E., Clark, V., Lei, C., Khan, M., & Prata, K. E. (2024). Cryptic species and hybridisation in corals: Challenges and opportunities for conservation and restoration. Peer Community Journal, 4, e106. https://doi.org/10.24072/pcjournal.492  

Remmers, T., Boutros, N., Wyatt, M., Gordon, S., Toor, T., Roelfsema, C., Fabricius, K., Grech, A., Lechene, M. A. A., & Ferrari, R. (2025). RapidBenthos: Automated segmentation and multi-view classification of coral reef communities from photogrammetric reconstruction. Methods in Ecology and Evolution, 16(2), 427–441. https://doi.org/10.1111/2041-210X.14477

P.J. Mumby, G. Sartori, E. Buccheri, C. Alessi, H. Allan, C. Doropoulos, G. Rengiil, & G. Ricardo, Allee effects limit coral fertilization success, Proc. Natl. Acad. Sci. U.S.A. 121 (52) e2418314121, https://doi.org/10.1073/pnas.2418314121 (2024) 

Álvarez-Noriega, M., Aston, E., Becker, M., Fabricius, K. E., Figueira, W. F., Gordon, S., Krensel, R., Lechene, M. A. A., Remmers, T., Toor, M., & Ferrari, R. (2025). Challenging paradigms around the role of colony size, taxa, and environment on bleaching susceptibility. Global Change Biology, 31(2), e70090. https://doi.org/10.1111/gcb.70090

Drake, M. A., Noonan, S. H. C., Alvarez-Noriega, M., Rashid, A. R., & Fabricius, K. E. (2025). Current velocity, water quality, and benthic taxa as predictors for coral recruitment rates on the Great Barrier Reef. PLOS ONE, 20(3), e0319521. https://doi.org/10.1371/journal.pone.0319521

Matias, A. M. A., Popovic, I., Thia, J. A., Cooke, I. R., Torda, G., Lukoschek, V., Bay, L. K., Kim, S. W., & Riginos, C. (2023). Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef. Evolutionary Applications, 16(2), 293–310. https://doi.org/10.1111/eva.13435

Briggs, N. D., Page, C. A., Giuliano, C., Alessi, C., Hoogenboom, M., Bay, L. K., & Randall, C. J. (2024). Dissecting coral recovery: Bleaching reduces reproductive output in Acropora millepora. Coral Reefs, 43(3), 557–569. https://doi.org/10.1007/s00338-024-02483-y

Ani, C. J., Haller-Bull, V., Gilmour, J. P., & Robson, B. J. (2024). Connectivity modelling identifies sources and sinks of coral recruitment within reef clusters. Scientific Reports, 14, Article 13564. https://doi.org/10.1038/s41598-024-64388-8

Sun, C., Steinberg, C., Klein Salas, E., Mellin, C., Babcock, R. C., Schiller, A., Cantin, N. E., Stella, J. S., Baird, M. E., Condie, S. A., Hobday, A. J., Herzfeld, M., Jones, N. L., Zhang, X., Chamberlain, M. A., Fiedler, R., Green, C., & Steven, A. D. L. (2024). Climate refugia in the Great Barrier Reef may endure into the future. Science Advances, 10(48), eado6884. https://doi.org/10.1126/sciadv.ado6884

Hsu, T.-H. T., Gordon, S., Ferrari, R., Hoey, A. S., & Figueira, W. F. (2025). Optimizing remote underwater video sampling to quantify relative abundance, richness, and corallivory rates of reef fish. Coral Reefs, 44, 435–449. https://doi.org/10.1007/s00338-024-02613-6

Aston, E. A., Duce, S., Hoey, A. S., & Ferrari, R. (2022). A protocol for extracting structural metrics from 3D reconstructions of corals. Frontiers in Marine Science, 9, 854395. https://doi.org/10.3389/fmars.2022.854395

Ferrari, R., Leon, J. X., Davies, A. J., Burns, J. H. R., Sandin, S. A., Figueira, W. F., & Gonzalez-Rivero, M. (2022). Editorial: Advances in 3D habitat mapping of marine ecosystem ecology and conservation. Frontiers in Marine Science, 8, 827430. https://doi.org/10.3389/fmars.2021.827430

Guillaume, A. S., Ferrari, R., Selmoni, O., Mocellin, V. J. L., Denis, H., Naugle, M., Howells, E., Bay, L. K., & Joost, S. (2025). Harnessing multiscale topographic environmental variables for regional coral species distribution models. Ecology and Evolution, 15(4), e71292. https://doi.org/10.1002/ece3.71292

Ricardo, G. F., Doropoulos, C., Babcock, R. C., Adam, A. A. S., Buccheri, E., Robledo, N., Uribe-Palomino, J., & Mumby, P. J. (2025). Spawning asynchrony and mixed reproductive strategies in a common mass spawning coral. Ecology and Evolution, 15, e71654. https://doi.org/10.1002/ece3.71654

Burgo, M., Fabricius, K. E., & Hoey, A. S. (2025). The structure and composition of macroalgal communities influence coral recruitment on an inshore reef of the Great Barrier Reef. Coral Reefs, 44, 1315–1326. https://doi.org/10.1007/s00338-025-02691-0

Meziere, Z., Prata, K., Lechene, M., Ferrari, R., Popović, I., & Riginos, C. (2025). Connectivity differs by orders of magnitude among co-distributed corals, affecting spatial scales of eco-evolutionary processes. Science Advances, 11(27), eadt2066. https://doi.org/10.1126/sciadv.adt2066

Greenwood, J., Sun, C. J., Doropoulos, C., Thomson, D., Baird, M., Porobic, J., & Condie, S. (2025). Passive retention of simulated larvae on coral reefs. Royal Society Open Science, 12(5). https://doi.org/10.1098/rsos.241708  

Doropoulos, C., Alvarez-Noriega, M., Fabricius, K. et al. Impact of environmental gradients on juvenile coral demography across the Great Barrier Reef and Torres Strait. Coral Reefs 44, 1875–1891 (2025). https://doi.org/10.1007/s00338-025-02742-6

Cheung, M. W. M., McWilliams, J., & van Woesik, R. (2025). Moving beyond temperature metrics in coral bleaching: The role of environmental context on bleaching responses. Global Ecology and Biogeography. Advance online publication. https://doi.org/10.1111/geb.70105

Ricardo, G., Doropoulos, C., Babcock, R.C. et al. Critical thresholds of adult patch density and spacing during coral fertilization. Nat Ecol Evol 9, 2092–2102 (2025). https://doi.org/10.1038/s41559-025-02844-y

Pisapia, C., Burn, D., Hoey, A.S. et al. Coral recovery versus reassembly following major disturbances in the Central Maldivian Archipelago. Coral Reefs (2025). https://doi.org/10.1007/s00338-025-02780-0

Webber, K., Fabricius, K., Wilson, S. K., Konovalov, D. A., Winding, N., & Hoey, A. S. (2025). Canapes in the canopy: Canopy macroalgae are dining hotspots for small and juvenile fishes at Orpheus Island, Great Barrier Reef. Marine Environmental Research, 212, Article 107490. https://doi.org/10.1016/j.marenvres.2025.107490

Burn, D., et al. (2025). Keystone coral species population collapse after unprecedented heat stress. Trends in Ecology & Evolution, 40(12), 1164–1166. https://doi.org/10.1016/j.tree.2025.10.006

Humanes, A., Fabricius, K. E., Ferrari, R., & Ortiz, J. C. (2025). Ecological quantitative criteria for reef site prioritisation to maximise survivorship and growth of outplanted corals. Journal of Environmental Management, 392, 126585. https://doi.org/10.1016/j.jenvman.2025.126585

Stratford, J.E., Mogg, A.O.M., Koldewey, H.J. et al. Fate-tracking early coral recruits following bleaching in a remote reef ecosystem. Coral Reefs 44, 1651–1667 (2025). https://doi.org/10.1007/s00338-025-02732-8
 
Rowell, D. A., Hammerman, N. M., Golding, K. M., Kenyon, T. M., Meziere, Z., Morgans, C., Brown, K. T., Diederiks, F. F., Carrasco Rivera, D. E., Eigeland, K., Paewai-Huggins, R., Markey, K., Beger, M., Chong, F., Donno, G., Dutton, A., Hsiao, V., Wanchien, K., Kininmonth, S., Lawson, C. A., … Roelfsema, C. (2025). Multi-scale observations during the 2024 mass coral bleaching event on Heron Reef, Australia. Marine Biology, 173(1), 17. https://doi.org/10.1007/s00227-025-04759-5
 
Buccheri, Elizabeth. 2025. “Drivers and Limitations of Early Recovery for Spawning Corals on the Great Barrier Reef.” University of Queensland Library. https://doi.org/10.14264/010a613.
 
Aston, Eoghan. 2023. “Quantifying and Assessing Coral Reef Structural Complexity and Its Role in Ecological Processes and Dynamics Using Photogrammetry.” Quantifying and Assessing Coral Reef Structural Complexity and Its Role in Ecological Processes and Dynamics Using Photogrammetry. James Cook University. https://doi.org/10.25903/1HW1-A964.
 
Le Nohaic, Morane (2025). The effects of Climate change on coral fecundity in the Great Barrier Reef. MPhil Thesis, School of the Environment, The University of Queensland.https://doi.org/10.14264/b536abe
 
Rowell, D. (2026). Drivers of juvenile coral mortality and implications for reef recovery and restoration [The University of Queensland, School of the Environment]. https://doi.org/10.14264/e2f68dc 
 
Meziere, Z. (2025). Genomic insights into coral diversity, connectivity and adaptation across the Great Barrier Reef [The University of Queensland, School of the Environment]. https://doi.org/10.14264/ff938f7
 
Ricardo, G.F., Doropoulos, C., Humanes, A. et al. Proximity and current alignment drive fertilisation success in a broadcast-spawning coral (Acropora cf. hyacinthus). Commun Biol (2026). https://doi.org/10.1038/s42003-026-10055-9  
 
Burgo M, Fabricius KE, Hoey AS (2026) Proximity to macroalgal beds together with herbivory influence the recruitment of macroalgae on an inshore reef in the central Great Barrier Reef. Mar Ecol Prog Ser 784:meps15119 https://doi.org/10.3354/meps15119
 
Humanes, A., Bay, L., Riginos, C. et al. Accelerating coral assisted evolution to keep pace with climate change. Nat. Rev. Biodivers. 2, 306–321 (2026). https://doi.org/10.1038/s44358-026-00147-z
Standard Operating Procedures

Langlais, C. et al. (2024) Reef Restoration and Adaptation Program – Developing, implementing and testing fine scale hydrodynamical models in the context of larval supply and restoration – Standard Operating Procedure. (23 pp). 

Tonks, M., Coman, F., Mason, R., Uribe-Palamino, H., Woods, D., Doropoulos, C. (2024) Reef Restoration and Adaptation Program – Plankton tow sampling to estimate coral larvae relative abundance – Standard Operating Procedure. (21pp).

Ricardo GF, Doropoulos C, Mumby PJ (2024) Reef Restoration and Adaptation Program – In-Situ Experiments to Estimate Fertilisation Success During Coral Spawning – Standard Operating Procedure.  (30pp). 

Gordon S., Aston E., Lechene M., Harianto J., Bray P., Figueira W., Gonzalez Rivero M., Ferrari Legorreta R. (2023) Field photogrammetry in 4D. Reef Restoration and Adaption Program (EcoRRAP). Standard Operational Procedure Number 14 (1 of series): Overview and in-field workflow. Australian Institute of Marine Science, Townsville. (62 pp) https://doi.org/10.25845/SE7T-PS86

Gordon S., Aston E., Lechene M., Remmers T., Piccaluga A., Brinker E., Cowasji Z., Harianto J., Bray P., Millar G., Watkin B., Figueira W., Gonzalez Rivero M., Ferrari Legorreta R. (2024) Field photogrammetry in 4D: Model Processing. Reef Restoration and Adaption Program (EcoRRAP). Standard Operational Procedure 15 (2 of series): Model processing. Australian Institute of Marine Science, Townsville. (57 pp) https://doi.org/10.25845/mwkv‐ez70

Toor, M., Lechene, M.A., Becker, M.L., Remmers-Barry, T., Gordon, S., Stratford, J., Ferrari, R. (2025) Field Photogrammetry in 4D: Digitisation and 2D metric extraction. Reef Restoration and Adaptation Program (EcoRRAP). Standard Operating Procedure 17 (No. 3 of series). Australian Institute of Marine Science, Townsville. (77pp).

Stratford, J., Toor, M., Guest, J., Jones, K.E., Ferrari R. (2026) Field Photogrammetry in 4D: Using AI to Monitor Coral Seeding Devices in TagLab. Reef Restoration and Adaptation Program & Pilot Deployment Program (EcoRRAP-PDP). Standard Operational Procedure Number 18 (No. 4 of series). Australian Institute of Marine Science, Townsville. (29pp). https://doi.org/10.25845/dsg4-cs73

Photogrammetry and Benthic Orthomosaics
EcoRRAP SketchFab Collection
EcoRRAP Benthic Orthomosaics:
  • 3D models and 2D orthomosaics of complex reef ecosystems allow for the extraction of metrics such as coral volume, surface area, and the spacing between colonies.
Technical and Synthesis Reports

Ferrari, R., Gordon, S., Toor, M., Noonan, S., Lechene, M., Becker, M., Piccaluga, A., Harianto, J., Aston, E., Guillame, A., Drake, M., Burn, D., Alvarez-Noriega, M., Nielsen, M., Brinkner, E., Figueira, W., Hoey, A., Lennon, D., and Fabricius, K. (2025) Reef Restoration and Adaptation Program – Integrated Field-testing and Sub-Program Management (ECO-01) Final Report. (27pp).

Doropoulos, C., Mumby, P. J., Donovan, A., Ricardo, G., Mason, R., Buccheri, E., Rowell, D., Le Nohaic, M., Coman, F., Craw, P., Holmes, B., Langlais, C., Moscatt, L., Orr, M., Salee, K., Thomson, R., Tonks, M., and Uribe Palomino, J. (2025) Reef Restoration and Adaptation Program – Limitations to Early Recovery (ECO-02) Final Report 2025. (28 pp).

Ortiz, J.C., Riginos, C., Popovic, I., Ferrari, R., Lechene, M., Noonan, S., Toor, M., Burn, D., Alvarez-Noriega, M., Becker, M., Lennon, D., Fabricius, K. (2025) Reef Restoration and Adaptation Program – Ecological and Genetic Adaptation (ECO-03) Final Report 2025. (54pp).

Traditional Owner and Stakeholder Engagement
and Regulation

Journal Articles

Vella, K., Baresi, U., Lockie, S., & Taylor, B. (2021). Challenges and opportunities for assisted regional ecosystem adaptation: International experience and implications for adaptation research. PLOS ONE, 16(9), Article e0257868. https://doi.org/10.1371/journal.pone.0257868

Curnock, M. I., Arya, R., Chamberland, E., Chartrand, K., Edmondson, J., Fisher, E. E., Forster, R., Lockie, S., Loder, J., Nembhard, D., & Scott, A. (2024). Reef visitors’ observation of assisted coral recovery devices in situ reduces concern about their use. PLOS ONE, 19(11), e0313345. https://doi.org/10.1371/journal.pone.0313345

Lockie, S., Graham, V., Taylor, B., Baresi, U., Maclean, K., Paxton, G., & Vella, K. (2024). Conceptualizing social risk in relation to climate change and assisted ecosystem adaptation. Risk Analysis. https://doi.org/10.1111/risa.17635

Lockie, S., Bartelet, H. A., Ritchie, B. W., Demeter, C., Taylor, B., & Sie, L. (2024). Australians support multi-pronged action to build ecosystem resilience in the Great Barrier Reef. Biological Conservation, 299, 110789. https://doi.org/10.1016/j.biocon.2024.110789

Kong, T. M., Taylor, B., & Graham, V. (2024). Why partner? Harnessing value from collaborative sustainable business models to restore coral reefs at scale. PLOS ONE, 19(12), e0315094. https://doi.org/10.1371/journal.pone.0315094

Paxton, G., Lockie, S., & Backhaus, V. (2024). Articulating futures: Community storylines and assisted ecosystem adaptation in the Great Barrier Reef. Environmental Science & Policy, 162, 103944. https://doi.org/10.1016/j.envsci.2024.103944

Baresi, U., Baum, C. M., Fischer, T. B., Lockie, S., Piggott-McKellar, A., Graham, V., & Ristovski, Z. (2024). A call for strategic assessments of regional applications of solar radiation management: Exploring the challenges and opportunities from marine cloud brightening and albedo surface modification. Environmental Impact Assessment Review, 110, 107701. https://doi.org/10.1016/j.eiar.2024.107701

Baresi, U., Eberhard, R., Vella, K., Gooch, M., Piggott-McKellar, A., Luna Calibeo, D., Lockie, S., Taylor, B., Bohensky, E., Brooksbank, L., Curnock, M., Graham, V., Kong, T., Lyons, I., Maclean, K., Paxton, G., Schmitt, K., Siehoyono Sie, L., & Stone-Jovicich, S. (2025). Community engagement for novel ecosystem restoration and assisted adaptation interventions: Observations and lessons from the Australian Reef Restoration and Adaptation Program. Society & Natural Resources, 38(6), 626–645. https://doi.org/10.1080/08941920.2025.2463088

Bartelet, H. A., Lockie, S., Ritchie, B. W., Demeter, C., Sie, L., & Taylor, B. (2025). Public support for novel interventions to protect, restore, and accelerate adaptation to climate change in the Great Barrier Reef. Ocean and Coastal Management, 260, Article 107489. https://doi.org/10.1016/j.ocecoaman.2024.107489

Lockie, S., Paxton, G., Bartelet, H., Draaisma, L. R., & Brooksbank, J. (2025). Imagining outcomes of coral restoration and adaptation intervention in the Great Barrier Reef. Restoration Ecology, 33(8), e70173. https://doi.org/10.1111/rec.70173

Majumdar, A., Eberhard, R., Vella, K., Smith, A., Donnelly, R., Foster, D., Erhart, D., Meldrum, T., Iovanella, P., Brodhurst, O., Tarte, D., & Kimberley, D. (2025). Power to the People, Power to the Reef: Harnessing Community Capital to Scale Adaption Delivery in the Great Barrier Reef. Sustainability17(18), 8116. https://doi.org/10.3390/su17188116

Paxton, G., Lockie, S., Dadpour, R., Bartelet, H. A., & Taylor, B. (2025). Ecological Outcomes and Societal Transformation: Multiple Visions for Adaptation in the Great Barrier Reef. Sustainability17(21), 9906. https://doi.org/10.3390/su17219906

Demeter, C., Bartelet, H. A., Lockie, S., Ritchie, B. W., & Dadpour, R. (2025). How do the Australian public perceive the risks and benefits of novel restoration and adaptation interventions on coral reefs? Journal of Cleaner Production, 533, Article 147041. https://doi.org/10.1016/j.jclepro.2025.147041

Dadpour, R., Lockie, S., Paxton, G. et al. How do members of the public feel about novel ecosystem interventions? A longitudinal study of emotional responses to restoration and adaptation in the Great Barrier Reef. Ambio (2026). https://doi.org/10.1007/s13280-025-02329-z

Piggott-McKellar, A., Eberhard, R., Pearson, J., Vella, K., & Baresi, U. (2026). How diversity shapes deliberation: Trade-offs in process and outcomes in an Advisory Group on the Great Barrier Reef. Climate Risk Management, 52, 100807. https://doi.org/10.1016/j.crm.2026.100807

Technical Reports and Guidelines

Taylor B, Hussey K, Fidelman P, Vella K, Maclean K, Newlands M, Ritchie B, Lockie S, Lacey J, McGrath C, Baresi U, Barber M, Koopman D (2019) Reef Restoration and Adaptation Program: Engagment and Regulatory Dimensions. A report provided to the Australian Government by the Reef Restoration and Adaptation Program (23pp)

Taylor B, Vella K, Maclean K, Newlands M, Ritchie B, Lockie S, Lacey J, Baresi U, Barber M, Siehoyono Sie L, Martin M, Marshall N, Koopman D (2019) Reef Restoration and Adaptation Program: Stakeholder, Traditional Owner and Community Engagement Assessment. A report provided to the
Australian Government by the Reef Restoration and Adaptation Program (95 pp)

Sie, L., Ritchie, B. W., & Lockie, S. (2022). Australian attitudes toward the protection and restoration of the Great Barrier Reef: Summary findings. Reef Restoration and Adaptation Program.

Williams, Liana; Stone-Jovicich, Samantha; Bohensky, Erin. Reef Restoration and Adaptation Program (RRAP) Best Practice Engagement – Participatory Community Panels. Townsville: CSIRO; 2021. csiro:EP2021-3271. https://doi.org/10.25919/xwk9-5c81 

Shumway, N., Foster, R., Head, B. and Fidelman, P. (2024). Governance Principles for Novel Reef Interventions. Reef Restoration and Adaptation Program. (33 pp).

Taylor, B.M., Bohensky, E., Curnock, M., Kong, T., Stone-Jovicich, S., Vella, K. Lockie, S. and Loder, J. (2024) Reef Restoration and Adaptation Program – Synthesis of best-practice engagement activities in RRAP Phase 1: objectives, findings and future directions.

Fidelman, P., McGrath, C., Newlands, M., & Dobbs, K. (2019). Regulatory implications of coral reef restoration and adaptation under a changing climate. Environmental Science & Policy, 100, 221–229. https://doi.org/10.1016/j.envsci.2019.04.016 

Shumway, N., Foster, R., Head, B., & Fidelman, P. (2023). Policy solutions needed for the future of coral reefs. BioScience, 73(11), 778–780. https://doi.org/10.1093/biosci/biad092

Shumway, N., Foster, R., & Fidelman, P. (2025). The governance of marine and coral reef restoration: Lessons and paths forward for novel interventions. Environmental Science & Policy, 164, 103999. https://doi.org/10.1016/j.envsci.2025.103999

Foster, R., Shumway, N., Harrison, D., & Fidelman, P. (2025). Governing marine cloud brightening for ecosystem conservation under a warming climate. Earth System Governance, 17, 100235. https://doi.org/10.1016/j.esg.2024.100235

Maclean, K., Muir, B., Forester, M., Moran, C. Grant, C., Evans-Illidge, L., Devow, D., Taylor, B., Schmitt, K. and P. Lyons. (2025) Reef Restoration and Adaptation Program –Overview of the RRAP Biocultural risk and opportunity assessment project. Reef Restoration and Adaptation Program (pp30)
 
 
Gooch, M., Majumdar, A. and Vella, K. (2025) Reef Restoration and Adaptation Program – Governance of reef restoration and adaptation interventions on the Great Barrier Reef – A research review of options. (129 pp).
 
RRAP (2025) Reef Restoration and Adaptation Program – Stakeholder Site Selection Workshop Cairns-Port Douglas Region – Summary Report. CSIRO. (20pp).
Synthesis Reports

Lockie, S., Taylor, B., Vella, K., Baresi, U., Bartelet, H., Bohensky, E., Curnock, M., Dadpour, R., Demeter, C., Eberhard, R., Graham, V., Gooch, M., Kong, T., Lyons, P., Paxton, G., Piggott-McKellar, A., Maclean, K., Moran, C., Ritchie, B., Schmitt, K., Stone-Jovicich, S., Majumdar, A., Hu, J. (2025) Reef Restoration and Adaptation Program – Stakeholder and Traditional Owner Engagement (ENG-01) Final Report. (21pp).

Modelling and Decision Support

Journal Articles

Stoeckl, N., Condie, S., & Anthony, K. (2021). Assessing changes to ecosystem service values at large geographic scale: A case study for Australia’s Great Barrier Reef. Ecosystem Services, 51, 101352. https://doi.org/10.1016/j.ecoser.2021.101352

Condie, S. A., Anthony, K. R. N., Babcock, R. C., Baird, M. E., Beeden, R., Fletcher, C. S., Gorton, R., Harrison, D., Hobday, A. J., Plagányi, É. E., & Westcott, D. A. (2021). Large-scale interventions may delay decline of the Great Barrier Reef. Royal Society Open Science, 8(4), 201296. https://doi.org/10.1098/rsos.201296

Richards, T. J., McGuigan, K., Aguirre, J. D., Humanes, A., Bozec, Y., Mumby, P. J., … & Riginos, C. (2023). Moving beyond heritability in the search for coral adaptive potential. Global Change Biology, 29(14), 3869-3882. https://doi.org/10.1111/gcb.16719

Pascoe, S., Anthony, K., Scheufele, G., & Pears, R. J. (2024). Identifying coral reef restoration objectives: A framework. Ocean & Coastal Management, 251, 107081. https://doi.org/10.1016/j.ocecoaman.2024.107081

Cresswell, A.K., Haller-Bull, V., Gonzalez-Rivero, M. et al. Capturing fine-scale coral dynamics with a metacommunity modelling framework. Sci Rep 14, 24733 (2024). https://doi.org/10.1038/s41598-024-73464-y

Yu, J., Baker, P., Cox, S. J., Petridis, R., Freebairn, A. C., Mirza, F., Thomas, L., Tickell, S., Lemon, D., & Rezvani, M. (2023). Provena: A provenance system for large distributed modelling and simulation workflows. In Proceedings of the 25th International Congress on Modelling and Simulation (MODSIM2023). Modelling and Simulation Society of Australia and New Zealand. https://mssanz.org.au/modsim2023/files/yu90.pdf

Crocker, R., Robson, B. J., Ani, C., Anthony, K., & Iwanaga, T. (2024). Synthetic data for reef modelling. Ecological Informatics, 82, 102698. https://doi.org/10.1016/j.ecoinf.2024.102698

Ani, C.J., Haller-Bull, V., Gilmour, J.P. et al. Connectivity modelling identifies sources and sinks of coral recruitment within reef clusters. Sci Rep 14, 13564 (2024). https://doi.org/10.1038/s41598-024-64388-8

Sun, C., Steinberg, C., Klein Salas, E., Mellin, C., Babcock, R. C., Schiller, A., Cantin, N. E., Stella, J. S., Baird, M. E., Condie, S. A., Hobday, A. J., Herzfeld, M., Jones, N. L., Zhang, X., Chamberlain, M. A., Fiedler, R., Green, C., & Steven, A. D. L. (2024). Climate refugia in the Great Barrier Reef may endure into the future. Science Advances, 10(48), eado6884. https://doi.org/10.1126/sciadv.ado6884

Stoeckl, N., Costanza, R., Dorji, N., Kubiszewski, I., Limenih, B., Tian, J., & Yamazaki, S. (2025). Valuing the reciprocating services that humans can provide to ecosystems. Ecological Indicators, 174, 113496. https://doi.org/10.1016/j.ecolind.2025.113496

Adam, A. A. S., Bozec, Y.-M., Hedley, J. D., & Mumby, P. J. (2025). Context-dependent benefits of coral reef restoration. Restoration Ecology, e70252. https://doi.org/10.1111/rec.70252

Adam, A. A. S., Bozec, Y.-M., Hedley, J. D., & Mumby, P. J. (2025). Context-dependent benefits of coral reef restoration. Restoration Ecology, e70252. https://doi.org/10.1111/rec.70252

Heneghan, R.F., Scheufele, G., Bozec, YM. et al. A framework to inform economic valuation of non-use benefits from coral reef intervention efforts. Coral Reefs (2026). https://doi.org/10.1007/s00338-026-02844-9 

Synthesis Reports

Sivapalan, M., Ortiz, J., Iwanaga, T., Yu, J., Mumby, P., Condie, S., Fitch, P., Whitt, A., Passaris, N., Marinovich, M. (2025) Reef Restoration and Adaptation Program – Management and Operations (M&DS-01) Final Report 2025. (19pp).

Bozec, Y-M., Adam, A., Bairos-Novak, K., Riginos, C. and Mumby, P. (2025) Reef Restoration and Adaptation Program – ReefMod R&D (M&DS-04) Final Report 2025. (33pp).

Ortiz, J. C., Creswell, A., Haller, V., Moore, J., and Lennon, D. (2025). Reef Restoration and Adaptation Program – Integrated Population Model Framework (IPMF) Research and Development (R&D) (M&DS-06) Final Report. (26pp).

Translation to Deployment

Journal Articles

Gibbs MT, Gibbs BL, Newlands M, Ivey J (2021) Scaling up the global reef restoration activity: Avoiding ecological imperialism and ongoing colonialism. PLoS ONE 16(5): e0250870. https://doi.org/10.1371/journal.pone.0250870

Gibbs, M. T. (2021). Technology requirements, and social impacts of technology for at-scale coral reef restoration. Technology in Society, 66, 101622. https://doi.org/10.1016/j.techsoc.2021.101622

Gibbs, M. T., & Newlands, M. (2021). Restoration heralds’ new management challenges for coral reefs. Marine Policy, 136, 104911. https://doi.org/10.1016/j.marpol.2021.104911

Gibbs, M.T. Developing a regional-scale reef restoration activity for the tropics. Reg Environ Change 21, 99 (2021). https://doi.org/10.1007/s10113-021-01843-6  

Lippmann RB, Helmstedt KJ, Gibbs MT, Corry P (2023) Optimizing facility location, sizing, and growth time for a cultivated resource: A case study in coral aquaculture. PLoS ONE 18(3): e0282668. https://doi.org/10.1371/journal.pone.0282668

Gibbs, M., Jackel, K., Ames, J., & McLeod, I. (2024). How the incentives of participating organizations influence the current scales of coral reef restoration activities. Aquatic Conservation: Marine and Freshwater Ecosystems, 34(1), e4077. https://doi.org/10.1002/aqc.4077

Gibbs, M. T. (2025). Oceanographic‐informed coral out‐planting density for coral reef restoration activities. Restoration Ecology, 33(1), e14315. https://doi.org/10.1111/rec.14315

Technical and Synthesis Reports

Davis, P., Corry, P., Jez, J., Dendle, N., Moshirian, B., Jackel, K., Fischer, T., Raine, S., Tsai, D., Samvedi, G., Lamont, R., Tutin, A., Morris, T., Lui, A., Esplin, J., Morris, A., Sim, L., and Hu, J. (2025) Reef Restoration and Adaptation Program – Translation to Deployment (T2D-01) Final Report 2025. (22 pp).

Enhanced Corals and Treatments

Journal Articles, Theses and Book Chapters

Howells, E.J., Bay, L.K., Bay, R.A. (2022). Identifying, Monitoring, and Managing Adaptive Genetic Variation in Reef-Building Corals under Rapid Climate Warming. In: van Oppen, M.J.H., Aranda Lastra, M. (eds) Coral Reef Conservation and Restoration in the Omics Age. Coral Reefs of the World, vol 15. Springer, Cham. https://doi.org/10.1007/978-3-031-07055-6_4

Randall, C.J., Speaks, J.E., Lager, C. et al. Rapid counting and spectral sorting of live coral larvae using large-particle flow cytometry. Sci Rep 10, 12919 (2020). https://doi.org/10.1038/s41598-020-69491-0

Randall CJ, Negri AP, Quigley KM, Foster T, Ricardo GF, Webster NS, Bay LK, Harrison PL, Babcock RC, Heyward AJ (2020) Sexual production of corals for reef restoration in the Anthropocene. Mar Ecol Prog Ser 635:203-232 https://doi.org/10.3354/meps13206

Macadam, A., Nowell, C. J., & Quigley, K. (2021). Machine Learning for the Fast and Accurate Assessment of Fitness in Coral Early Life History. Remote Sensing, 13(16), 3173. https://doi.org/10.3390/rs13163173

Roepke, L. K., Brefeld, D., Soltmann, U., Randall, C. J., Negri, A. P., & Kunzmann, A. (2022). Applying behavioral studies to the ecotoxicology of corals: A case study on Acropora millepora. Frontiers in Marine Science, 9, 1002924. https://doi.org/10.3389/fmars.2022.1002924

Maire, J., Buerger, P., Chan, W. Y., Deore, P., Dungan, A. M., Nitschke, M. R., & van Oppen, M. J. H. (2022). Effects of ocean warming on the underexplored members of the coral microbiome. Integrative and Comparative Biology, 62(6), 1700–1709. https://doi.org/10.1093/icb/icac005

“Scharfenstein, H. J., Chan, W. Y., Buerger, P., Humphrey, C., & van Oppen, M. J. H. (2022). Evidence for de novo acquisition of microalgal symbionts by bleached adult corals. The ISME Journal, 16(6), 1676–1679. https://doi.org/10.1038/s41396-022-01203-0

Howells, E.J., Bay, L.K., Bay, R.A. (2022). Identifying, Monitoring, and Managing Adaptive Genetic Variation in Reef-Building Corals under Rapid Climate Warming. In: van Oppen, M.J.H., Aranda Lastra, M. (eds) Coral Reef Conservation and Restoration in the Omics Age. Coral Reefs of the World, vol 15. Springer, Cham. https://doi.org/10.1007/978-3-031-07055-6_4

van Oppen, M.J.H., Nitschke, M.R. (2022). Increasing Coral Thermal Bleaching Tolerance via the Manipulation of Associated Microbes. In: van Oppen, M.J.H., Aranda Lastra, M. (eds) Coral Reef Conservation and Restoration in the Omics Age. Coral Reefs of the World, vol 15. Springer, Cham. https://doi.org/10.1007/978-3-031-07055-6_8

“Thatcher, C., Høj, L., & Bourne, D. G. (2022). Probiotics for coral aquaculture: Challenges and considerations. Current Opinion in Biotechnology, 73, 380–386. https://doi.org/10.1016/j.copbio.2021.09.009

Scharfenstein, H., Alvarez‐Roa, C., Peplow, L. M., Buerger, P., Chan, W. Y., & Oppen, M. J. H. v. (2023). Chemical mutagenesis and thermal selection of coral photosymbionts induce adaptation to heat stress with trait trade‐offs. Evolutionary Applications, 16(9), 1549-1567. https://doi.org/10.1111/eva.13586

Matias, A. M. A., Popovic, I., Thia, J. A., Cooke, I., Torda, G., Lukoschek, V., … & Riginos, C. (2022). Cryptic diversity and spatial genetic variation in the coral acropora tenuis and its endosymbionts across the great barrier reef. Evolutionary Applications, 16(2), 293-310. https://doi.org/10.1111/eva.13435

Chan, W. Y., Meyers, L., Rudd, D., Topa, S. H., & Oppen, M. J. H. v. (2023). Heat‐evolved algal symbionts enhance bleaching tolerance of adult corals without trade‐off against growth. Global Change Biology, 29(24), 6945-6968. https://doi.org/10.1111/gcb.16987

Quigley, K.M., Alvarez-Roa, C., Raina, JB. et al. Heat-evolved microalgal symbionts increase thermal bleaching tolerance of coral juveniles without a trade-off against growth. Coral Reefs 42, 1227–1232 (2023). https://doi.org/10.1007/s00338-023-02426-z

Turnlund, A. C., Vanwonterghem, I., Botté, E. S., Randall, C. J., Giuliano, C., Kam, L., Bell, S., O’Brien, P., Negri, A. P., Webster, N. S., & Lurgi, M. (2023). Linking differences in microbial network structure with changes in coral larval settlement. ISME Communications, 3(1), 114. https://doi.org/10.1038/s43705-023-00320-x

Madin, J. S., McWilliam, M., Quigley, K., Bay, L. K., Bellwood, D., Doropoulos, C., Fernandes, L., Harrison, P., Hoey, A. S., Mumby, P. J., Ortiz, J. C., Richards, Z. T., Riginos, C., Schiettekatte, N. M. D., Suggett, D. J., & van Oppen, M. J. H. (2023). Selecting coral species for reef restoration. Journal of Applied Ecology, 60(8), 1537–1544. https://doi.org/10.1111/1365-2664.14447

Chan, W. Y., Rudd, D., & van Oppen, M. J. H. (2023). Spatial metabolomics for symbiotic marine invertebrates. Life Science Alliance, 6(8), e202301900. https://doi.org/10.26508/lsa.202301900

Riginos, C.; Popovic, I.; Meziere, Z.; Garcia, V.; Byrne, I.; Howitt, S. M.; Ishida, H.; Bairos-Novak, K.; Humanes, A.; Scharfenstein, H.; Richards, T.; Briggs, E.; Clark, V.; Lei, C.; Khan, M.; Prata, K. E. Cryptic species and hybridisation in corals: challenges and opportunities for conservation and restoration. Peer Community Journal, Volume 4 (2024), article no. e106. https://doi.org/10.24072/pcjournal.492

Briggs, N.D., Page, C.A., Giuliano, C. et al. Dissecting coral recovery: bleaching reduces reproductive output in Acropora millepora. Coral Reefs 43, 557–569 (2024). https://doi.org/10.1007/s00338-024-02483-y

Meziere, Z., Popovic, I., Prata, K. E., Ryan, I., Pandolfi, J. M., & Riginos, C. (2024). Exploring coral speciation: multiple sympatric stylophora pistillata taxa along a divergence continuum on the great barrier reef. Evolutionary Applications, 17(1). https://doi.org/10.1111/eva.13644

Selmoni, O., Bay, L. K., Exposito-Alonso, M., & Cleves, P. A. (2024). Finding genes and pathways that underlie coral adaptation. Trends in Genetics, 40(3), 213–227. https://doi.org/10.1016/j.tig.2024.01.003

Naugle, M.S., Denis, H., Mocellin, V.J.L. et al. Heat tolerance varies considerably within a reef-building coral species on the Great Barrier Reef. Commun Earth Environ 5, 525 (2024). https://doi.org/10.1038/s43247-024-01649-4

Scharfenstein, H., Peplow, L. M., Alvarez‐Roa, C., Nitschke, M. R., Chan, W. Y., Buerger, P., … & Oppen, M. J. H. v. (2024). Pushing the limits: expanding the temperature tolerance of a coral photosymbiont through differing selection regimes. New Phytologist, 243(6), 2130-2145. https://doi.org/10.1111/nph.19996

Nitschke, M. R., Abrego, D., Allen, C. E., Alvarez-Roa, C., Boulotte, N. M., Buerger, P., Chan, W. Y., Fae Neto, W. A., Ivory, E., Johnston, B., Meyers, L., Parra, C., Peplow, L., Perez, T., Scharfenstein, H. J., & van Oppen, M. J. H. (2024). The use of experimentally evolved coral photosymbionts for reef restoration. Trends in Microbiology, 32(8), 708–719. https://doi.org/10.1016/j.tim.2024.05.008

Denis, H., Bay, L. K., Mocellin, V. J. L., Naugle, M. S., Lecellier, G., Purcell, S. W., Berteaux-Lecellier, V., & Howells, E. J. (2024). Thermal tolerance traits of individual corals are widely distributed across the Great Barrier Reef. Proceedings of the Royal Society B: Biological Sciences, 291(2030), 20240587. https://doi.org/10.1098/rspb.2024.0587

Macadam, A., Morgans, C., Cheok, J., Damjanovic, K., Ciampaglia, M., Toor, M., Laffy, P., Cooke, I. R., Strugnell, J. M., & Quigley, K. M. (2025). Assessing the potential for “assisted gene flow” to enhance heat tolerance of multiple coral genera over three key phenotypic traits. Biological Conservation, 306, 111155. https://doi.org/10.1016/j.biocon.2025.111155

Turnlund, A.C., O’Brien, P.A., Rix, L. et al. Understanding the role of micro-organisms in the settlement of coral larvae through community ecology. Mar Biol 172, 43 (2025). https://doi.org/10.1007/s00227-025-04607-6

Ivory, E.A., Mieog, J.C., Nitschke, M.R. et al. Interactions among wildtype and heat-evolved photosymbionts shape performance of coral recruits. Coral Reefs 44, 643–655 (2025). https://doi.org/10.1007/s00338-025-02632-x

O’Brien, P.A., Bell, S.C., Rix, L. et al. Light and dark biofilm adaptation impacts larval settlement in diverse coral species. Environmental Microbiome 20, 11 (2025). https://doi.org/10.1186/s40793-025-00670-0

Saper, J., Raina, JB., Humphrey, C., Høj, L., Bourne, D.G. (2025). Microbial Processes and Nutrient Uptake in the Coral Holobiont and Reef Ecosystems. In: Peixoto, R.S., Voolstra, C.R. (eds) Coral Reef Microbiome. Coral Reefs of the World, vol 20. Springer, Cham. https://doi.org/10.1007/978-3-031-76692-3_9

Thatcher, C., Damjanovic, K., Kuek, F., Laffy, P. W., Bourne, D. G., & Høj, L. (2025). Bacterial dynamics in newly settled Acropora kenti: Insights from inoculations with individual probiotic candidates. Environmental Microbiology, 27(7). https://doi.org/10.1111/1462-2920.70143

Johnston, B. G., Nitschke, M. R., Chan, W. Y., & van Oppen, M. J. H. (2025). Horizontal transmission of heat-evolved microalgal symbionts in adult corals. The ISME Journal, 19(1), wraf157. https://doi.org/10.1093/ismejo/wraf157

Roper, C. D., Suggett, D. J., Songsomboon, K., Edmondson, J., England, H., Haydon, T. D., Goyen, S., Duijser, C. M., Alderdice, R., Voolstra, C. R., & Camp, E. F. (2025). Coral thermotolerance retained following year-long exposure to a novel environment. Science Advances, 11(32), eadu3858. https://doi.org/10.1126/sciadv.adu3858

Goyen, S., Chille, E.E., Stephens, T.G. et al. Green fluorescent proteins show divergent patterns among species and strains of Porites from the Great Barrier Reef. Coral Reefs (2025). https://doi.org/10.1007/s00338-025-02781-z 

Marquardt, B., Elder, H., Yeoh, Y. K., Heyward, A., Randall, C. J., Harrison, P. L., Logan, M., & Howells, E. (2025). Determining the diversity and relative abundance of coral taxa in wild spawning slicks for effective restoration. Frontiers in Ecology and Evolution, 13, 1602543. https://doi.org/10.3389/fevo.2025.1602543

Lamb, A. M., Morgans, C. A., McCutchan, G. A., Mocellin, V. J. L., Denis, H., Naugle, M. S., Lemonius, A. J., Edmunds, R. C., Wooster, M. K., Bay, L. K., Howells, E. J., & van Oppen, M. J. H. (2026). A selective breeding design based on parental rapid heat stress thresholds did not produce more heat-tolerant coral larvae. Ecological Solutions and Evidence, 7, e70178. https://doi.org/10.1002/2688-8319.70178

Dallmeyer-Drennen, G., Y.Sato, C. A.Page, D. G.Bourne, and H. A.Smith. 2026. “Genetic Diversity of Sexually Propagated Corals Is Maintained From the Aquarium to the Reef.” Molecular Ecology35, no. 5: e70289. https://doi.org/10.1111/mec.70289.

Turnlund, Abigail Camilla (2024). Interactions between coral larval settlement, marine biofilms and crustose coralline algae microbiomes. PhD Thesis, School of Chemistry and Molecular Biosciences, The University of Queensland.https://doi.org/10.14264/30e05cf

Saper, Julia (2022) Augmented coral health: linking heterotrophic diets to the
acquisition of probiotics in symbiotic scleractinia. Masters (Research) Thesis,
James Cook University. https://doi.org/10.25903/mda8%2Ds320 

Altice, M. S. (2024). Cultured, heat-evolved symbionts can increase the fitness of coral juveniles (Master of Environmental Science and Management thesis, Southern Cross University). https://doi.org/10.25918/thesis.392

Nandi, S., T. G.Stephens, E. E.Chille, S.Goyen, L. K.Bay, and D.Bhattacharya. 2026. “Metaproteome Analysis of Short-Term Thermal Stress in Three Sympatric Coral Species Reveals Divergent Host Responses.” Ecology and Evolution 16, no. 3: e73275. https://doi.org/10.1002/ece3.73275.

Denis, H., Prata, K., Ishida, H., et al. (2026). Contrasting population structures of reef-building corals and their algal symbionts inform adaptive potential across the western Pacific. Current Biology.  https://doi.org/10.1016/j.cub.2026.04.057

Johnston, B.G., Garing, M.R., Klein, A.R., Chan, W.Y., Nitschke, M.R. and van Oppen, M.J.H. (2026), Heat-evolved coral photosymbionts exhibit dampened stress responses across distinct physiological contexts. New Phytol. https://doi.org/10.1111/nph.71177

Technical Reports and Standard Operating Procedures

Nitschke, MR., Ivory E, van Oppen MJH. (21/11/2024) Reef Restoration and Adaptation Program – Stability of Heat-Evolved Coral Photosymbionts in a Mesocosm System.

Rix, L., Mock, T., Damjanovic, K., Varkey, D., O’Brien, P., Vanwonterghem, I., Yeoh, Y.K., Thatcher, C.,
Bourne, D., Kuek, F., Bell, S, Godinez, S., Laffy, P., Marangon, E., Somasundaram, T., Hoj, L. (2024) Reef
Restoration and Adaptation Program – Prokaryote treatments and coral nutrition: Feasibility of research and recommendations (pp).

Godinez-Espinosa, S., Høj, L. (2 June 2025) Reef Restoration and Adaptation Program – Feeding of coral spat produced in aquaculture – Standard Operating Procedure. (15 pp)

Chan, W.Y., Nitschke, M. (20/11/2024) Reef Restoration and Adaptation Program – Final report – metabolomic data on adult coral x Symbiodiniaceae pairings analysed and interpreted. (pp24).

Synthesis Reports

Riginos, C., Howells, EJ., Elder, H., Howlett, L. and Molinaro, G. (2025) Reef Restoration and Adaptation Program – Genetic Basis of Key Traits (ECT-01) Final Report 2025. (17 pp).

van Oppen, M.J.H., Lamb, A., Nitschke, M., Chan, W., Molinaro, G. and Howlett, L. (2025) Reef Restoration and Adaptation Program – Assisted Evolution (ECT-02) Final Report 2025. (21 pp).

Høj, L., Rix, L., O’Brien, P., Varkey, D., Damjanovic, K., Mock, T., Somasundaram, T., Howlett, L. and Molinaro, G. (2025) Reef Restoration and Adaptation Program – Prokaryotes Treatments and Coral Nutrition (ECT-03) Final Report 2025. (23 pp).

Coral Aquaculture and Deployment

Journal Articles

Randall, C.J., Giuliano, C., Mead, D. et al. Immobilisation of living coral embryos and larvae. Sci Rep 9, 14596 (2019). https://doi.org/10.1038/s41598-019-51072-5

Randall, C. J., Speaks, J. E., Lager, C., Hagedorn, M., Llewellyn, L., Pulak, R., Thompson, J., Bay, L. K., Mead, D., Heyward, A. J., & Negri, A. P. (2020). Rapid counting and spectral sorting of live coral larvae using large-particle flow cytometry. Scientific Reports, 10, Article 12919. https://doi.org/10.1038/s41598-020-69491-0

Randall, C. J., Negri, A. P., Quigley, K. M., Foster, T., Ricardo, G. F., Webster, N. S., Bay, L. K., Harrison, P. L., Babcock, R. C., & Heyward, A. J. (2020). Sexual production of corals for reef restoration in the Anthropocene. Marine Ecology Progress Series, 635, 203–232. https://doi.org/10.3354/meps13206

Randall, C. J., Giuliano, C., Heyward, A. J., & Negri, A. P. (2021). Enhancing coral survival on deployment devices with microrefugia. Frontiers in Marine Science, 8, 662263. https://doi.org/10.3389/fmars.2021.662263

Roepke, L. K., Brefeld, D., Soltmann, U., Randall, C. J., Negri, A. P., & Kunzmann, A. (2022). Antifouling coatings can reduce algal growth while preserving coral settlement. Scientific Reports, 12, Article 15935. https://doi.org/10.1038/s41598-022-19997-6

Roepke, L. K., Brefeld, D., Soltmann, U., Randall, C. J., Negri, A. P., & Kunzmann, A. (2022). Applying behavioral studies to the ecotoxicology of corals: A case study on Acropora millepora. Frontiers in Marine Science, 9, Article 1002924. https://doi.org/10.3389/fmars.2022.1002924

Briggs, N.D., Page, C.A., Giuliano, C. et al. Dissecting coral recovery: bleaching reduces reproductive output in Acropora millepora. Coral Reefs 43, 557–569 (2024). https://doi.org/10.1007/s00338-024-02483-y

Abdul Wahab, M.A., Ferguson, S., Snekkevik, V.K. et al. Hierarchical settlement behaviours of coral larvae to common coralline algae. Sci Rep 13, 5795 (2023). https://doi.org/10.1038/s41598-023-32676-4

Randall, C.J., Giuliano, C., Stephenson, B. et al. Larval precompetency and settlement behaviour in 25 Indo-Pacific coral species. Commun Biol 7, 142 (2024). https://doi.org/10.1038/s42003-024-05824-3

Ramsby, B.D., Emonnot, F., Flores, F. et al. Low light intensity increased survival of coral spat in aquaculture. Coral Reefs 43, 627–640 (2024). https://doi.org/10.1007/s00338-024-02489-6

Jeong, S. Y., Gabrielson, P. W., Hughey, J. R., Hoey, A. S., Cho, T. O., Abdul Wahab, M. A., & Diaz-Pulido, G. (2023). New branched Porolithon species (Corallinales, Rhodophyta) from the Great Barrier Reef, Coral Sea, and Lord Howe Island. Journal of Phycology, 59(5), 1025–1041. https://doi.org/10.1111/jpy.13387

Pratchett, M. S., Baird, A. H., & Pratchett, D. J. (2022). Settlement cue selectivity by larvae of the destructive crown-of-thorns starfish. Biology Letters, 18(11), 20220399. https://doi.org/10.1098/rsbl.2022.0399

Randall, C. J., Giuliano, C., Allen, K., Bickel, A., Miller, M., & Negri, A. P. (2022). Site mediates performance in a coral‐seeding trial. Restoration Ecology, 30(6), e13745. https://doi.org/10.1111/rec.13745

Severati, A., Nordborg, M., Heyward, A., Abdul Wahab, M., Brunner, C. A., Montalvo-Proaño, J., & Negri, A. P. (2024). The AutoSpawner system – Automated ex situ spawning and fertilisation of corals for reef restoration. Journal of Environmental Management, 366, 121886. https://doi.org/10.1016/j.jenvman.2024.121886

Whitman, T.N., Hoogenboom, M.O., Negri, A.P. et al. Coral-seeding devices with fish-exclusion features reduce mortality on the Great Barrier Reef. Sci Rep 14, 13332 (2024). https://doi.org/10.1038/s41598-024-64294-z

Fong, J., Ramsby, B.D., Flores, F. et al. Effects of material type and surface roughness of settlement tiles on macroalgal colonisation and early coral recruitment success. Coral Reefs 43, 1083–1096 (2024). https://doi.org/10.1007/s00338-024-02526-4

Neil, R.C., Heyward, A., Bourne, D.G. et al. Let the fish do the cropping: identifying fish grazers to improve coral aquaculture. Coral Reefs 44, 749–758 (2025). https://doi.org/10.1007/s00338-024-02612-7

Curnock, M. I., Arya, R., Chamberland, E., Chartrand, K., Edmondson, J., Fisher, E. E., Forster, R., Lockie, S., Loder, J., & Nembhard, D. (2024). Reef visitors’ observation of assisted coral recovery devices in situ reduces concern about their use. PLOS ONE, 19(11), e0313345. https://doi.org/10.1371/journal.pone.0313345

Whitman, T. N., Jurriaans, S., Lefevre, C., Sims, C. A., Radford, B., Puotinen, M., Hoogenboom, M. O., Negri, A. P., & Randall, C. J. (2025). Seeded Acropora digitifera corals survive best on wave-exposed reefs with grazing from small fishes. Restoration Ecology, 1–12. Advance online publication. https://doi.org/10.1111/rec.70016

Neil, R. C., Barton, J. A., Dougan, W., Dworjanyn, S., Heyward, A., Mos, B., Bourne, D. G., & Humphrey, C. (2024). Size matters: Microherbivores make a big impact in coral aquaculture. Aquaculture, 581, 740402. https://doi.org/10.1016/j.aquaculture.2023.740402

Fong, J., Jackson, T.L., Flores, F. et al. The interplay of temperature, light, and substrate type in driving growth and reproduction of an important tropical crustose coralline alga. J Appl Phycol 36, 3133–3145 (2024). https://doi.org/10.1007/s10811-024-03312-z

Montalvo-Proano, J., Flores, F., Severati, A. et al. Fouling release coatings reduce colonisation of coral seeding devices. Sci Rep 15, 24023 (2025). https://doi.org/10.1038/s41598-025-08268-9

Neil, R. C., Barton, J. A., Heyward, A., Francis, D. S., Nankervis, L., Mock, T. S., Bourne, D. G., & Humphrey, C. (2025). Improving coral grow-out through an integrated aquaculture approach. Aquaculture Nutrition, 2025(1), 1–13. https://doi.org/10.1155/anu/1446195

Jurriaans, S., Lefèvre, C.D., Allen, K. et al. Wave energy and other environmental drivers as predictors of seeded-coral performance on the great barrier reef. Sci Rep 15, 38335 (2025). https://doi.org/10.1038/s41598-025-22199-5

Ramsby, B. D., Forster, R., Ferguson, S. N., Haikola, P., Randall, C. J., Abdul Wahab, M. A., Mead, D. J., & Severati, A. (2025). Developing coral seeding devices and rapid deployment methods to scale up reef restoration. Restoration Ecology. https://doi.org/10.1111/rec.70206

Montalvo-Proano, J., Alvarez-Noriega, M., Flores, F., Severati, A., & Negri, A. P. (2025). Fouling-release coatings enhance Acropora loripes coral spat survival by limiting algal competition on seeding devices. Frontiers in Marine Science, 12, Article 1684011. https://doi.org/10.3389/fmars.2025.1684011

Diaz-Pulido, G., Melvin, S.D., Ferguson, S. et al. Species-specific metabolomic profiles of coral reef coralline algae and their influence on the larval settlement of corals and crown-of-thorns starfish. Sci Rep 16, 409 (2026). https://doi.org/10.1038/s41598-025-29875-6 

Turnlund, A. C. (2026). Bacterial communities associated with crustose coralline algae are host-specific. MicrobiologyOpen, 15(1), e70213. https://doi.org/10.1002/mbo3.70213

Briggs, N.D., Negri, A.P., Antunes, E. et al. Directing coral larval settlement in coral aquaculture for reef restoration. Sci Rep 16, 7358 (2026). https://doi.org/10.1038/s41598-026-37592-x 

Abdul Wahab, M. A., Ferguson, S., Whitehead, B., Fong, J., Haikola, P., Severati, A., & Antunes, E. (2026). The role of substrate materials for the survival and growth of coral micro-fragment sheets. Restoration Ecology. Advance online publication. https://doi.org/10.1111/rec.70335

Ramsby, B. D., Brunner, R., Barton, J., Ferguson, S., Grimm, C., Hiçyilmaz, Y. C., Bourne, D. G., Negri, A. P., Severati, A., Sato, Y., & Abdul Wahab, M. A. (2026). Coral larval aquaculture: Species-specific survival and microbial dynamics in flow-through systems. PLOS ONE, 21(2), e0340422. https://doi.org/10.1371/journal.pone.0340422

Jurriaans, S., Lefèvre, C.D., Ferguson, S. and Randall, C.J. (2026), Propagation method and species drive survival patterns across reef zones in coral seeding on the Great Barrier Reef. Restor Ecol e70358. https://doi.org/10.1111/rec.70358

Grimm, C. M., J.Barton, D. G.Bourne, Y.Sato, and J.Doyle. 2026. “Addressing a Flat-Out Problem: Environmental DNA (eDNA) Exposes Silent Infestations of Acropora- ating Flatworms (Prosthiostomum acroporae) in Coral Aquaculture.” Ecology and Evolution16, no. 4: e73386. https://doi.org/10.1002/ece3.73386.

Technical Reports and Standard Operating Procedures

Montalvo-Proano J, Flores F, Page CA, Randall CJ, Severati A, Negri AP (2025) Fouling control for coral aquaculture and deployment, intervention technical summary. Technical Report provided to the Australian Government by the Reef Restoration and Adaptation Program. (23pp).

Nordborg, F.M., Brunner, C.A., Negri, A.P., Abdul Wahab, M.A., Zampa, G., Lavorel, T. & Severati, A. (2024). Reef Restoration and Adaptation Program – Technical report: Best practises to optimise early grow-out and survivorship in coral aquaculture. Pp 39.

Nordborg, F.M., Brunner, C.A., Severati, A., Negri, A.P., Stephenson, S., Abdul-Wahab, A.M. (2024). Standard Operating Procedure: Optimised larval settlement in a high throughput coral aquaculture facility. SOP prepared for the Reef Restoration and Adaptation Program. Australian Institute of Marine Science,
Townsville QLD. Pp 41.

Ramsby, B.D. & M.A. Abdul Wahab (9/9/2024) Reef Restoration and Adaptation Program –Technical Report: Preserving settlement material to reduce spatial competition and increase flexibility for larval-based coral restoration. (pp 22).

Antunes, E., Drane, M., Astbury, G., Flores, F., Fong, J., Negri, A., Severati, A., Abdul Wahab, M. (09/09/2024) Reef Restoration and Adaptation Program – Technical Report: Applied science material for coral aquaculture (3.1.3-4Q4), pp. 38.

Howlett, L., Forster, R., Mocellin, V., Severati, A. and Abdul Wahab, M. (2025) Final Summary Report: ECT and CAD Field Activities. (pp22).

Doyle, J. et al (2024) Reef Restoration and Adaptation Program, Technical Report – Assay development and approach to detect pest species in coral aquaculture: a case study with the Acropora eating flatworm, Prosthiostomum acroporae. (pp30).

Sato, Y., Grimm, C., Brunner, R., and Bourne, D. (2024) Reef Restoration and Adaptation Program – Bacterial load assessment in coral aquaculture–standard operating procedure. (54 pp).

Synthesis Reports

Abdul Wahab, M., Negri, A., Randall, C.J., Jurriaans, S., Whitman, T.N., Flores, F., Barner, L., Severati, A., Abrego, D., Diaz-Pulido, G., Ramsby, B., Ferguson, S., Forster, R., Molinaro, G., and Howlett, L. (2025) Reef Restoration and Adaptation Program – Coral Propagation and Deployment (CAD-01) Final Report 2025. (29 pp).

Abdul Wahab, M., Nordborg, F.M., Sato, Y., Neil, R., Bourne, D., Molinaro, G., Severati, A., and Howlett, L. (2025) Reef Restoration and Adaptation Program – Engineering Large Scale Coral Aquaculture (CAD-02) Final Report 2025. (26 pp).

Howlett, L., Forster, R., Molinaro, G., Randall, C.J., Severati, A. and Abdul Wahab, M. (2025) Reef Restoration and Adaptation Program – Sub-Program Management, Field Program and Trials (CAD-03) Final Report 2025. (18pp).

Moving Corals

Journal Articles, Theses and Book Chapters

Doropoulos, C., & Roff, G. (2022). Coloring coral larvae allows tracking of local dispersal and settlement. PLOS Biology, 20(12), e3001907. https://doi.org/10.1371/journal.pbio.3001907

Doropoulos, C., & Vanderklift, M. A. (2022). Harvesting coral spawn slicks for reef restoration. In S. M. Hamylton, P. Hutchings, & O. Hoegh-Guldberg (Eds.), Coral reefs of Australia: Perspectives from beyond the water’s edge (pp. 273–279). CSIRO Publishing. https://doi.org/10.1071/9781486315499

Gouezo, M., Doropoulos, C., Slawinski, D., Cummings, B., & Harrison, P. (2023). Underwater macrophotogrammetry to monitor in situ benthic communities at submillimetre scale. Methods in Ecology and Evolution, 14(9), 2494–2509. https://doi.org/10.1111/2041-210X.14175

Langley, C., Harrison, P. L., & Doropoulos, C. (2024). Optimizing initial stocking densities of wild coral spawn slicks for mass production of larvae and settled corals for restoration. Restoration Ecology, 32(7), e14239. https://doi.org/10.1111/rec.14239

Waters, C., Harrison, P. L., Gouezo, M., Severati, A., & Doropoulos, C. (2025). Early-stage coral survivorship using wild larval assemblages on coral seeding devices for reef restoration. Restoration Ecology, 33(3), e14387. https://doi.org/10.1111/rec.14387

Gouezo, M., Langlais, C., Beardsley, J., Roff, G., Harrison, P. L., Thomson, D. P., & Doropoulos, C. (2025). Going with the flow: Leveraging reef-scale hydrodynamics for upscaling larval-based restoration. Ecological Applications, 35(3), e70020. https://doi.org/10.1002/eap.70020

Harrison, P. L. (2024). Sexual reproduction of reef corals and application to coral restoration. In Oceanographic processes of coral reefs (2nd ed., pp. 19). CRC Press. https://doi.org/10.1201/9781003320425-32

Doropoulos, C., Roff, G., Carlin, G., Gouezo, M., Dela Cruz, D., Chai, A., Hardiman, L., Hasson, L., Thomson, D. P., & Harrison, P. L. (2025). Larval seedboxes: A modular and effective tool for scaling coral reef restoration. Ecological Applications, 35(7), e70140. https://doi.org/10.1002/eap.70140

Mason, R. A. B., Langlais, C., Uribe-Palomino, J., Tonks, M. L., et al. (2025). Reef-scale variation in larval supply and settlement: Validating Lagrangian dispersal predictions with observations of coral larvae. Estuarine, Coastal and Shelf Science, 326, 109506. https://doi.org/10.1016/j.ecss.2025.109506

Gouezo, M., Roff, G., Carlin, G., Doropoulos, C., Dela Cruz, D., Chai, A., Hardiman, L., Hasson, L., Thomson, D. P., & Harrison, P. L. (2025). Coral larval enhancement with and without nets yields similar recruitment during slack-current releases. Restoration Ecology. Advance online publication. https://doi.org/10.1111/rec.70219

Langley, C., Doropoulos, C., dela Cruz, D., & Harrison, P. L. (2025). Effects of shading aquaculture pools on coral larvae health and production. Aquaculture, 609, 742953. https://doi.org/10.1016/j.aquaculture.2025.742953

Langley C, Doropoulos C, dela Cruz D, Harrison PL (2025) Scaling up coral spawn collection: Impacts of method and timing on Acropora valida larval quality. PLoS One 20(9): e0331461. https://doi.org/10.1371/journal.pone.0331461

Waters, C. (2025). Developing and scaling settlement, deployment and monitoring of wild cultured larvae for reef restoration [Doctoral dissertation, Southern Cross University]. Southern Cross University Repository. https://doi.org/10.25918/thesis.505

Langley, C. (2025). Optimising mass culturing of coral larvae from wild coral spawn: Enhancing survival and production for scalable reef restoration [Doctoral dissertation, Southern Cross University]. Southern Cross University Repository. https://doi.org/10.25918/thesis.527

 

Technical Reports and Standard Operating Procedures

Harrison, P.L.*, Doropoulos, C.*, Gouezo, M., Roff, G., Carlin, G., dela Cruz, D., Langlais, C., Beardsley, J., Forcey, K. (2025) Reef Restoration and Adaptation Program – Moving Corals Reef-based Coral Larval Restoration – Standard Operating Procedure. (pp. 95).

Synthesis Reports

Doropoulos, C.*, Harrison, P. L.*, Gouezo, M., Roff, G., Langley, C., Waters, C., Carlin, G., dela Cruz, D., Hardiman, L., Thomson, D. P., Donovan, A., Millist, Y., Langlais, C., and Beardsley, J. (2025) Reef Restoration and Adaptation Program – Larval Collection, Culture, Deployment, Translocation (MC-01) Final Report 2025. (36 pp).

Rubble Stabilisation

Journal Articles and Theses

Ceccarelli, D. M., McLeod, I. M., Boström-Einarsson, L., Bryan, S. E., Chartrand, K. M., Emslie, M. J., Gibbs, M. T., Gonzalez Rivero, M., Hein, M. Y., Heyward, A., Kenyon, T. M., Lewis, B. M., Mattocks, N., Newlands, M., Schläppy, M.-L., Suggett, D. J., & Bay, L. K. (2020). Substrate stabilisation and small structures in coral restoration: State of knowledge, and considerations for management and implementation. PLOS ONE, 15(10), e0240846. https://doi.org/10.1371/journal.pone.0240846

Lewis, B. M., Suggett, D. S., Prentis, P. J., & Nothdurft, L. D. (2022). Cellular adaptations leading to coral fragment attachment on artificial substrates in Acropora millepora (Am-CAM). Scientific Reports, 12, Article 18431. https://doi.org/10.1038/s41598-022-23134-8

Kenyon, T. M., Mumby, P. J., Callaghan, D. P., Baldock, T. E., & Doropoulos, C. (2023). Coral rubble dynamics in the Anthropocene and implications for reef recovery. Limnology and Oceanography, 68(12), 2955–2969. https://doi.org/10.1002/lno.12254

Harris, D. L., Webster, J. M., Vila-Concejo, A., Duce, S., Leon, J. X., & Hacker, J. (2023). Defining multi-scale surface roughness of a coral reef using a high-resolution LiDAR digital elevation model. Geomorphology, 439, 108852. https://doi.org/10.1016/j.geomorph.2023.108852

Kenyon, T. M., Harris, D., Baldock, T., Callaghan, D., Doropoulos, C., Webb, G., Newman, S. P., & Mumby, P. J. (2023). Mobilisation thresholds for coral rubble and consequences for windows of reef recovery. Biogeosciences, 20(20), 4339–4357. https://doi.org/10.5194/bg-20-4339-2023

Kenyon, T. M., Jones, C., Rissik, D., Brassil, W., Callaghan, D. P., Mattocks, N., & Baldock, T. E. (2025). Bio-degradable ‘reef bags’ used for rubble stabilisation and their impact on rubble stability, binding, coral recruitment and fish occupancy. Ecological Engineering, 210, 107433. https://doi.org/10.1016/j.ecoleng.2024.107433

Kenyon TM, Eigeland K, Wolfe K, et al. Material Legacies on Coral Reefs: Rubble Length and Bed Thickness Are Key Drivers of Rubble Bed Recovery. Glob Chang Biol. 2024;30(11):e17574. doi:10.1111/gcb.17574

Deng, W., Kenyon, T., Eigeland, K., Callaghan, D. P., & Baldock, T. E. (2025). Structural and hydrodynamic modelling of the probability of breakage of branching and plate coral colonies. Coastal Engineering, 195, 104647. https://doi.org/10.1016/j.coastaleng.2024.104647

Liu, D., Callaghan, D. P., Wuppukondur, A., & Baldock, T. E. (2025). A probabilistic coral rubble mechanical instability model applied with field observations from the Great Barrier Reef. Coastal Engineering, 195, 104655. https://doi.org/10.1016/j.coastaleng.2024.104655

Kenyon, T. M., Mumby, P. J., Webb, G. E., Dove, S., Newman, S. P., & Doropoulos, C. (2025). Trajectories and agents of binding in stabilized and unstabilized coral rubble across environmental gradients. Ecosphere, 16(2), e70195. https://doi.org/10.1002/ecs2.70195

Liu, D., Callaghan, D. P., & Baldock, T. E. (2025). Accelerating coral rubble instability assessments with machine learning: Insights from the Great Barrier Reef. Applied Ocean Research, 158, Article 104580. https://doi.org/10.1016/j.apor.2025.104580

Liu, D., Callaghan, D. P., & Baldock, T. E. (2025). Quantifying the impact of future climate change on the risk of coral rubble instability across the Great Barrier Reef by 2100. Journal of Environmental Management, 386, Article 125716. https://doi.org/10.1016/j.jenvman.2025.125716

Cheung, Mandy W.M., Chaloupka, Milani, Mumby, Peter J., and Callaghan, David P. (2025). The spatial risk of cyclone wave damage across the Great Barrier Reef. Ecological Informatics 89 103175 103175-89. https://doi.org/10.1016/j.ecoinf.2025.103175

Deng, W., Kenyon, T., Eigeland, K., Callaghan, D. P., & Baldock, T. E. (2025). Structural and hydrodynamic modelling of the probability of breakage of branching and plate coral colonies. Coastal Engineering, 195, 104647. https://doi.org/10.1016/j.coastaleng.2024.104647

Lewis, B., Suggett, D., Prentis, P., Cooper, C., & Nothdurft, L. (2025). Asexual reproduction in reef-building corals: insights into fragment attachment to improve restoration and predict natural recovery. Royal Society Open Science, 12(10), Article 251209. https://doi.org/10.1098/rsos.251209

Deng, W., Simonnet, C., Nolan, L., Callaghan, D. P., & Baldock, T. E. (2026). Investigating coral rubble dynamics through tilting base and flume experiments. Coastal Engineering, 205, 104931. https://doi.org/10.1016/j.coastaleng.2025.104931

Kenyon, T. M., Eigeland, K., Richardson, M. A., Baldock, T. E., Wolfe, K. D., Sjahruddin, F. F., & Mumby, P. J. (2025). Threshold velocities for coral rubble bind breakage across varying reef environments. Marine Ecology Progress Series, 773, 1–16. https://doi.org/10.3354/meps14982

Kenyon, Tania M. (2021). From Rubble to Reef: The physical and biological dynamics of coral reef rubble beds. PhD Thesis, School of Biological Sciences, The University of Queensland.https://doi.org/10.14264/30ab794

Lewis, Brett. (2024) Substrate attachment in colonial Scleractinia. PhD thesis, Queensland University of Technology.

Synthesis Reports

Baldock, T., Kenyon, T., Harris, D., Callaghan, D., Bryan, S.E., Lewis, B.M. and Mumby. P. (2025) Reef Restoration and Adaptation Program – Rubble Location, Prediction and Sub-program Management (RS-01) Final Report 2025. (21pp).

Bryan, S. E., Kenyon T. and Lewis, B. M. (2025) Reef Restoration and Adaptation Program – Approaches to Stabilisation (RS-02) Final Report. (23pp).

Leung, S., Kenyon, T., and Mumby, P. (2025) Reef Restoration and Adaptation Program – Synthesis, Intervention Tool and Guidelines (RS-03) Final Report 2025. (17pp).

Cryopreservation

Journal Articles

Zuchowicz, N., Daly, J., Bouwmeester, J. et al. Assessing coral sperm motility. Sci Rep 11, 61 (2021). https://doi.org/10.1038/s41598-020-79732-x

Hobbs, R. J., O’Brien, J. K., Bay, L. K., Severati, A., Spindler, R., Henley, E. M., Quigley, K. M., Randall, C. J., van Oppen, M. J. H., Carter, V., Zuchowicz, N., Hagedorn, M., & Daly, J. (2022). A decade of coral biobanking science in Australia – transitioning into applied reef restoration. Frontiers in Marine Science, 9, 960470. https://doi.org/10.3389/fmars.2022.960470

Daly, J., Hobbs, R.J., Zuchowicz, N. et al. Cryopreservation can assist gene flow on the Great Barrier Reef. Coral Reefs 41, 455–462 (2022). https://doi.org/10.1007/s00338-021-02202-x

Daly, J., Bouwmeester, J., Perry, R., Page, C., Khosla, K., Kangas, J., Lager, C., Hardy, K., Bischof, J. C., & Hagedorn, M. (2023). The first proof of concept demonstration of nanowarming in coral tissues. Advanced Sustainable Systems, 7(10), 2300303. https://doi.org/10.1002/adsu.202300303

Daly, J., Hobbs, R., Severati, A., Nordborg, M., Bay, L., Zuchowicz, N., Hagedorn, M., & O’Brien, J. (2023). Maximizing the utility of cryopreservation as an enabling technology in coral reef recovery and resilience. Cryobiology, 113, 104672. https://doi.org/10.1016/j.cryobiol.2023.104672

Powell-Palm, M.J., Henley, E.M., Consiglio, A.N. et al. Cryopreservation and revival of Hawaiian stony corals using isochoric vitrification. Nat Commun 14, 4859 (2023). https://doi.org/10.1038/s41467-023-40500-w

Page, C., Perry, R., Lager, C. V. A., Daly, J., Bouwmeester, J., Henley, E. M., & Hagedorn, M. (2023). Tank fouling community enhances coral microfragment growth. PeerJ, 11, e15723. https://doi.org/10.7717/peerj.15723

Daly, J., Hobbs, R., Zuchowicz, N., Hagedorn, M., & O’Brien, J. K. (2024). A semi-automated workflow for the cryopreservation of coral sperm to support biobanking and aquaculture. Journal of Visualized Experiments, 208, e66233. https://doi.org/10.3791/66233

Daly, J., Van Issum, H., Cummins, M., Evans-Illidge, E., Randall, C. J., Boyd, S., … O’Brien, J. K. (2024). Cross-cultural approach to biobanking of living coral cells on Woppaburra sea Country in the southern inshore Great Barrier Reef. Australasian Journal of Environmental Management, 32(1), 6–21. https://doi.org/10.1080/14486563.2024.2401567

Guo, Z., Zuchowicz, N., Bouwmeester, J., Joshi, A. S., Neisch, A. L., Smith, K., Daly, J., Etheridge, M. L., Finger, E. B., Kodandaramaiah, S. B., Hays, T. S., Hagedorn, M., & Bischof, J. C. (2024). Conduction-dominated cryomesh for organism vitrification. Advanced Science, 11(3), Article 2303317. https://doi.org/10.1002/advs.202303317

Lager, C. V. A., Perry, R., Daly, J., Page, C., Mizobe, M., Bouwmeester, J., Consiglio, A. N., Carter, J., Powell-Palm, M. J., & Hagedorn, M. (2024). Cryophysiology of coral microfragments: Effects of chilling and cryoprotectant toxicity. PeerJ, 12, e18447. https://doi.org/10.7717/peerj.18447

Technical Reports and Standard Operating Procedures

Daly, J., O’Brien, J., Whitelock, A. (May 2025) Reef Restoration and Adaptation Program – Assessing coral sperm fertility potential using Computer Assisted Sperm Analysis (CASA) – Standard Operating Procedure. (31 pp).

Synthesis Reports

Cooling and Shading

Journal Articles and Book Chapters

Baird, M. E., Green, R., Lowe, R., Mongin, M., & Bougeot, E. (2020a). Optimising cool-water injections to reduce thermal stress on coral reefs of the Great Barrier Reef. PLoS ONE, 15, e0239978. https://doi.org/10.1371/journal.pone.0239978

Baird, M. E., Wild-Allen, K. A., Parslow, J., Mongin, M., Robson, B., Skerratt, J., Rizwi, F., Soja-Woźniak, M., Jones, E., Herzfeld, M., Margvelashvili, N., Andrewartha, J., Langlais, C., Adams, M. P., Cherukuru, N., Gustafsson, M., Hadley, S., Ralph, P. J., Rosebrock, U., … Steven, A. D. L. (2020). CSIRO Environmental Modelling Suite (EMS): Scientific description of the optical and biogeochemical models (vB3p0). Geoscientific Model Development, 13, 4503–4553. https://doi.org/10.5194/gmd-13-4503-2020

Condie, S. A., Anthony, K. R. N., Babcock, R. C., Baird, M. E., Beeden, R., Fletcher, C. S., Gorton, R., Harrison, D., Hobday, A. J., Plagányi, É. E., & Westcott, D. A. (2021). Large-scale interventions may delay decline of the Great Barrier Reef. Royal Society Open Science, 8, 201296. https://doi.org/10.1098/rsos.201296

Tagliafico, A., Baker, P., Kelaher, B., Ellis, S., & Harrison, D. (2022). The effects of shade and light on corals in the context of coral bleaching and shading technologies. Frontiers in Marine Science, 9. https://doi.org/10.3389/fmars.2022.919382

Butcherine, P., Tagliafico, A., Ellis, S. L., Kelaher, B. P., Hendrickson, C., & Harrison, D. (2023). Intermittent shading can moderate coral bleaching on shallow reefs. Frontiers in Marine Science, 10. https://doi.org/10.3389/fmars.2023.1162896

Eckert, C., Monteforte, K. I., Harrison, D. P., & Kelaher, B. P. (2023). Exploring meteorological conditions and microscale temperature inversions above the Great Barrier Reef through drone-based measurements. Drones, 7, 695. https://doi.org/10.3390/drones7120695

Hernandez-Jaramillo, D. C., Harrison, L., Kelaher, B., Ristovski, Z., & Harrison, D. P. (2023). Evaporative cooling does not prevent vertical dispersion of effervescent seawater aerosol for brightening clouds. Environmental Science & Technology, 57, 20559–20570. https://doi.org/10.1021/acs.est.3c04793

Eckert, C., Hernandez-Jaramillo, D. C., Medcraft, C., Harrison, D. P., & Kelaher, B. P. (2024). Drone-based measurement of the size distribution and concentration of marine aerosols above the Great Barrier Reef. Drones, 8, 292. https://doi.org/10.3390/drones8070292

Ellis, S. L., Butcherine, P., Tagliafico, A., Hendrickson, C., Kelaher, B. P., Schulz, K. G., & Harrison, D. P. (2024). Shading responses are species-specific in thermally stressed corals. Frontiers in Marine Science, 11. https://doi.org/10.3389/fmars.2024.1333806

Hendrickson, C., Butcherine, P., Tagliafico, A., Ellis, S. L., Harrison, D. P., & Kelaher, B. P. (2024). Combining shading and lipid-enriched diets as an adaption tool to reduce coral bleaching. Journal of Experimental Marine Biology and Ecology, 572, 151988. https://doi.org/10.1016/j.jembe.2024.151988

Hernandez-Jaramillo, D. C., Medcraft, C., Braga, R. C., Butcherine, P., Doss, A., Kelaher, B., Rosenfeld, D., & Harrison, D. P. (2024). New airborne research facility observes sensitivity of cumulus cloud microphysical properties to aerosol regime over the Great Barrier Reef. Environmental Science: Atmospheres. https://doi.org/10.1039/D4EA00009A

Richards, L. S., Siems, S. T., Huang, Y., Zhao, W., Harrison, D. P., Manton, M. J., & Reeder, M. J. (2024). The meteorological drivers of mass coral bleaching on the central Great Barrier Reef during the 2022 La Niña. Scientific Reports, 14, 23867. https://doi.org/10.1038/s41598-024-74181-2

Ryan, R. G., Eckert, C., Kelaher, B. P., Harrison, D. P., & Schofield, R. (2024). Boundary layer height above the Great Barrier Reef studied using drone and Mini-Micropulse LiDAR measurements. Journal of Southern Hemisphere Earth Systems Science, 74. https://doi.org/10.1071/ES24008

Scofield, J. M. P., Prime, E. L., Flores, F., Severati, A., Mongin, M., Bougeot, E., Baird, M. E., Negri, A. P., & Qiao, G. G. (2024). The development of a floating mono-particle “Sun Shield” to protect corals from high irradiance during bleaching conditions. Journal of Marine Science and Engineering, 12, 1809. https://doi.org/10.3390/jmse12101809

Harrison DP (2024) An Overview of Environmental Engineering Methods for Reducing Coral Bleaching Stress. In: Wolanski E, Kingsford M (eds) Oceanographic Processes of Coral Reefs. CRC Press, pp484

Foster, R., Shumway, N., Harrison, D., & Fidelman, P. (2025). Governing marine cloud brightening for ecosystem conservation under a warming climate. Earth System Governance, 23, 100240. https://doi.org/10.1016/j.esg.2025.100240

Baresi, U., Baum, C. M., Fischer, T. B., Lockie, S., Piggott-McKellar, A., Graham, V., Bohensky, E., Fritz, L. B., Shumway, N., Harrison, D. P., Foster, R., Sovacool, B. K., Vella, K., & Ristovski, Z. (2025). A call for strategic assessments of regional applications of solar radiation management: Exploring the challenges and opportunities from marine cloud brightening and albedo surface modification. Environmental Impact Assessment Review, 110, 107701. https://doi.org/10.1016/j.eiar.2024.107701

Braga, R. C., Rosenfeld, D., Hernandez, D., Medcraft, C., Efraim, A., Moser, M., Lucke, J., Doss, A., & Harrison, D. (2025). Cloud processing dominates the vertical profiles of aerosols in marine air masses over the Great Barrier Reef. Atmospheric Research, 107928. https://doi.org/10.1016/j.atmosres.2025.107928

Deschaseaux, E. S. M., Dunne, E., Schulz, K. G., Eyre, B. D., & Harrison, D. P. (2025). The Central Great Barrier Reef as a net source of climatically relevant biogenic volatile organic compounds. Journal of Geophysical Research: Oceans, 130, e2024JC021192. https://doi.org/10.1029/2024JC021192

Hernandez-Jaramillo, D. C., Kelaher, B., & Harrison, D. P. (2025a). A review of plume dispersion and measurement techniques applicable to marine cloud brightening. Frontiers in Marine Science, 12. https://doi.org/10.3389/fmars.2025.1450175

Hernandez-Jaramillo, D. C., Harrison, L., Gunner, G., McGrath, A., Junkermann, W., Lieff, W., Hacker, J., Rosenfeld, D., Kelaher, B., & Harrison, D. P. (2025). First generation outdoor marine cloud brightening trial increases aerosol concentration at cloud base height. Environmental Research Letters, 20, 054065. https://doi.org/10.1088/1748-9326/adccd7

Virah-Sawmy, D., Beck, F. J., & Sturmberg, B. (2025). The synergy between battery and hydrogen storage in stand-alone hybrid systems: A parameterised load approach. International Journal of Hydrogen Energy, 141, 266–282. https://doi.org/10.1016/j.ijhydene.2025.05.324

Ellis, S. L., Baird, M. E., Harrison, L. P., Schulz, K. G., & Harrison, D. P. (2025). A photophysiological model of coral bleaching under light and temperature stress: Experimental assessment. Conservation Physiology, 13. https://doi.org/10.1093/conphys/coaf020

Harrison, L. P., Medcraft, C., & Harrison, D. P. (2025). Effervescent nozzle design to enable outdoor marine cloud brightening experimentation. Environmental Science: Atmospheres, 5, 1071–1080. https://doi.org/10.1039/D5EA00073D

Ryan, R. G., Toms-Hardman, L., Smirnov, A., Harrison, D. P., & Schofield, R. (2025). Aerosol vertical profiling over the Southern Great Barrier Reef using lidar and MAX-DOAS measurements. Atmospheric Chemistry and Physics, 25, 11183–11197. https://doi.org/10.5194/acp-25-11183-2025

Horchler, E. J., Alroe, J., Harrison, L., Cravigan, L., Harrison, D. P., & Ristovski, Z. D. (2025). Measurement report: Aerosol and cloud nuclei properties along the Central and Northern Great Barrier Reef — impact of continental emissions. Atmospheric Chemistry and Physics, 25, 10075–10087. https://doi.org/10.5194/acp-25-10075-2025

Yu, J., et al (2025). A coupled Eulerian–Lagrangian approach with explicit volume diffusion subgrid modeling in turbulent jet breakup and spray dispersion. Applications in Energy and Combustion Science, 24, Article 100350. https://doi.org/10.1016/j.jaecs.2025.100350

Khan, S. B., Alroe, J., Medcraft, C., Sauret, E., Harrison, D., & Ristovski, Z. (2025). Secondary droplet breakup of impaction-pin nozzle: Comparison between experimental and CFD-DPM modelling. Journal of Aerosol Science, 190, Article 106664. https://doi.org/10.1016/j.jaerosci.2025.106664

Wu, L., Horchler, E. J., Ristovski, Z., Liu, J., Yu, F., Han, S., Zhao, W., Richards, L., Harrison, D., Zheng, J., & Miljevic, B. (2025). Ammonia emissions from an avian-rich island in the Great Barrier Reef: Environmental drivers and observational insights. Atmospheric Environment, 361, Article 121525. https://doi.org/10.1016/j.atmosenv.2025.121525

Medcraft, C., et al. (2025). Flash atomisation of saltwater through convergent-divergent nozzles: Implications for marine cloud brightening. Journal of Aerosol Science, 191, Article 106677. https://doi.org/10.1016/j.jaerosci.2025.106677

Li, Z., Harrison, L., Alroe, J., Scoble, H., Chen, C., Medcraft, C., Holloway, C., Brown, R., Baker, P., Harrison, D. P., & Ristovski, Z. (2025). Characterizing the crosswind structure of artificial seawater droplet plumes during a sea trial on the Great Barrier Reef. Environmental Science & Technology, 59(50), 27222–27229. https://doi.org/10.1021/acs.est.5c10024 

Virah-Sawmy, D., Beck, F. J., & Sturmberg, B. (2025). Uncertainty ahead: Should stand-alone energy systems bet on hydrogen backup? Energy Reports, 14, 3481–3494. https://doi.org/10.1016/j.egyr.2025.10.026

Ryan, R.G., Harrison, D.P., Johansson, L. et al. Ship fuel sulfur content regulations may exacerbate mass coral bleaching events on the Great Barrier Reef. Commun Earth Environ 7, 46 (2026), https://doi.org/10.1038/s43247-025-03088-1 

Haskell, J.B., Deschaseaux, E.S.M., Dunne, E., Swan, H.B., Harrison, D.P. and Eyre, B.D. (2026), A closed-loop system for the semi-continuous measurement of biogenic volatile organic compounds from marine organisms. Limnol Oceanogr Methods e70028. https://doi.org/10.1002/lom3.70028

Eckert C, Monteforte KI, Medcraft C, Doss A, Harrison DP, Kelaher BP. Drone-Based Measurements of Marine Aerosol Size Distributions and Source–Receptor Relationships over a Great Barrier Reef Lagoon. Remote Sensing. 2026; 18(2):251. https://doi.org/10.3390/rs18020251

Eckert, C., Tong, F., Harrison, D. P., & Kelaher, B. P. (2026). Quantifying drone propeller-induced flow for optimal aerosol sensor placement. Physics of Fluids, 38(1), Article 015179. https://doi.org/10.1063/5.0310240

Richards, L. S., Siems, S. T., Huang, Y., Harrison, D. P., & Zhao, W. (2026). Trade wind regimes during the Great Barrier Reef coral bleaching season. Weather and Climate Dynamics, 7(1), 109–127. https://doi.org/10.5194/wcd-7-109-2026

Hendrickson, C. A., Butcherine, P., & Ellis, S. L. (2026). Experimental evaluation of marine fogging as a coral bleaching intervention method. Marine Environmental Research, 217, 107943. https://doi.org/10.1016/j.marenvres.2026.107943

Hendrickson, C., Kyle, J. S., Butcherine, P., Harrison, D., & Kelaher, B. P. (2026). Seawater fogging reduces mortality and bleaching in two coral species during a heatwave and subsequent recovery. Frontiers in Marine Science, 13, Article 1793318.

Technical and Synthesis Reports

Harrison, D., Ristovski, Z., Ryan, R., Zhao, W., Sulo, J., Horchler, J., Huang, Y., Schofield, R., Deschaseaux, E., Harrison, L., Holloway, C., Braga, R., Rosenfeld, D., and Siems, S. (2025) Reef Restoration and Adaptation Program – GBR Atmospheric Survey (CS-01) Final Report 2025. (33 pp).

Harrison, D. P., Huang, Y., Woodhouse, M., Schofield, R., Chavez, S., Jackson, R., Ryan, R., Zhao, W., Harrison, L., Braga, R., and Holloway, C. (2025) Reef Restoration and Adaptation Program – Environmental Modelling (CS-03) Final Report 2025. (56 pp).

Harrison, D.P., and Holloway, C. (2025) Reef Restoration and Adaptation Program – Cooling and Shading Sub-program Management (CS-04) Final Report 2025. (56 pp).

Harrison, D. P., Ristovski, Z., Rosenfeld, D., Holloway, C., Cleary, M., Kourmatzis, A., Harrison, L., Braga, R. C., Medcraft, C., Hernandez-Jaramillo, D. C., Efraim, A., Chen, C., Sturmberg, B., Virah-Sawmy, D., Yu, J., Harper-Harris, J., Galindo Lopez, S., Li, Z., Hunt, H., Fitzgerald, S., McGrath, D., and Reardon, E. (2025) Reef Restoration and Adaptation Program –Cloud and Sky Brightening Development (CS-06) Final Report 2025. (56 pp).

Harrison D. P., Ristovski, Z., Butcherine, P., Harrison, L., Ellis, S., Alroe, J., Li, Z., Chen, C., Hendrickson, C., Kelaher, B. and Holloway, C. (2025) Reef Restoration and Adaptation Program – Fogging Development (CS-07) Final Report 2025. (59 pp).

Feasibility Study