Journal Articles

  1. Pascoe, S., Anthony, K., Scheufele, G., Pears, R. (2024) Identifying coral reef restoration objectives: A framework, Ocean & Coastal Management, Volume 251, 
  2. Harrison D P (2024) An Overview of Environmental Engineering Methods for Reducing Coral Bleaching Stress in Oceanographic Processes of Coral Reefs. Physical and Biological Links in The Great Barrier Reef. Ed. Wolanski E, Kingsford MJ, CRC Press, Boca Raton, Fla.

  3. Gibbs, M.Jackel, K.Ames, J. & McLeod, I. (2024). How the incentives of participating organizations influence the current scales of coral reef restoration activitiesAquatic Conservation: Marine and Freshwater Ecosystems34(1), e4077. https://doi.org/10.1002/aqc.4077
  4. Briggs, N.D., Page, C.A., Giuliano, C. et al. Dissecting coral recovery: bleaching reduces reproductive output in Acropora milleporaCoral Reefs (2024). https://doi.org/10.1007/s00338-024-02483-y 
  5. Ramsby, B.D., Emonnot, F., Flores, F. et al. Low light intensity increased survival of coral spat in aquaculture. Coral Reefs (2024). https://doi.org/10.1007/s00338-024-02489-6
  6. Selmoni O, Bay LK, Exposito-Alonso M, Cleves PA. Finding genes and pathways that underlie coral adaptation. Trends Genet. 2024 Mar;40(3):213-227. doi: 10.1016/j.tig.2024.01.003. Epub 2024 Feb 6. PMID: 38320882.
  7. Webber, K., Fabricius, K., Wilson, S.K. et al. The influence of Sargassum biomass and thallus density on the recruitment of coral reef fishes. Coral Reefs (2024). https://doi.org/10.1007/s00338-024-02494-9
  8. Harrison D P (2024) An Overview of Environmental Engineering Methods for Reducing Coral Bleaching Stress in Oceanographic Processes of Coral Reefs. Physical and Biological Links in The Great Barrier Reef. Ed. Wolanski E, Kingsford MJ, CRC Press, Boca Raton, Fla. 

  9. Lechene, M.A., Figueira, W., Murray, N., Aston, E., Gordon, S., Ferrari, R.(2024) Evaluating error sources to improve precision in the co-registration of underwater 3D models, Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2024.102632. 

  10. Whitman, T.N., Hoogenboom, M.O., Negri, A.P. et al. Coral-seeding devices with fish-exclusion features reduce mortality on the Great Barrier Reef. Sci Rep 14, 13332 (2024). https://doi.org/10.1038/s41598-024-64294-z 
  11. Daly, J., Hobbs, R., Zuchowicz, N., Hagedorn, M., O’Brien, J. K. A Semi-Automated Workflow for the Cryopreservation of Coral Sperm to Support Biobanking and Aquaculture. J. Vis. Exp. (208), e66233, doi:10.3791/66233 (2024). 
  12. Zhao, W., Huang, Y., Siems, S., Manton, M., and Harrison, D.: Interactions between trade wind clouds and local forcings over the Great Barrier Reef: a case study using convection-permitting simulations, Atmos. Chem. Phys., 24, 5713–5736, https://doi.org/10.5194/acp-24-5713-2024, 2024.
  13. Fabricius KE, Cooley SR, Golbuu Y, Riginos C, Gonzalez-Rivero M, Heron SF, et al. (2024) Research priorities to support coral reefs during rapid climate change. PLOS Clim 3(7): e0000435. https://doi.org/10.1371/journal.pclm.0000435
  14. Severati, A. Nordborg, M. Heyward, A. Abdul Wahab, M., Brunner, C.A. Montalvo-Proano, J. Negri, A. P. The AutoSpawner system – Automated ex situ spawning and fertilisation of corals for reef restoration, Journal of Environmental Management, Volume 366, 2024, https://doi.org/10.1016/j.jenvman.2024.121886
  15. Lockie, S., Graham, V., Taylor, B., Baresi, U., Maclean, K., Paxton, G., & Vella, K. (2024). Conceptualizing social risk in relation to climate change and assisted ecosystem adaptation. Risk Analysis, 1–14. https://doi.org/10.1111/risa.17635.

  16. Ryan Robert G., Eckert Christian, Kelaher Brendan P., Harrison Daniel P., Schofield Robyn (2024) Boundary layer height above the Great Barrier Reef studied using drone and Mini-Micropulse LiDAR measurements. Journal of Southern Hemisphere Earth Systems Science 74, ES24008. https://doi.org/10.1071/ES24008 

  17. Ellis, Sophia & Butcherine, Peter & Tagliafico, Alejandro & Hendrickson, Conor & Kelaher, Brendan & Schulz, Kai & Harrison, Daniel. (2024). Shading responses are species-specific in thermally stressed corals. Frontiers in Marine Science. 11. 10.3389/fmars.2024.1333806.
  18. Jiayue Yu, Sebastian Galindo-Lopez, Bosen Wang, Agisilaos Kourmatzis, Matthew J. Cleary, Analysis of the explicit volume diffusion subgrid closure for the Σ−Y model to interfacial flows over a wide range of Weber numbers, International Journal of Multiphase Flow, Volume 179, 2024,
    104914, ISSN 0301-9322, https://doi.org/10.1016/j.ijmultiphaseflow.2024.104914.
  19. Diana C. Hernandez-Jaramillo, Chris Medcraft, Ramon Campos Braga, Peter Butcherine, Adrian Doss, Brendan Kelaher, Daniel Rosenfeld, Daniel P. Harrison, New airborne research facility observes sensitivity of cumulus cloud microphysical properties to aerosol regime over the Great Barrier Reef. Environmental Science: Atmospheres, Volume 4, Issue 8,
    2024, https://doi.org/10.1039/d4ea00009a
  20. Eckert C, Hernandez-Jaramillo DC, Medcraft C, Harrison DP, Kelaher BP. Drone-Based Measurement of the Size Distribution and Concentration of Marine Aerosols above the Great Barrier Reef. Drones. 2024; 8(7):292. https://doi.org/10.3390/drones8070292
  21. Richards, L.S., Siems, S.T., Huang, Y. et al. The meteorological drivers of mass coral bleaching on the central Great Barrier Reef during the 2022 La Niña. Sci Rep 14, 23867 (2024). https://doi.org/10.1038/s41598-024-74181-2
  22. Martin, C.C., McClure, E.C., Webber, K. et al. Utilisation of macroalgal habitats by juvenile rabbitfishes on an inshore reef. Coral Reefs (2024). https://doi.org/10.1007/s00338-024-02581-x
  23. Scharfenstein, H. J., Peplow, L. M., Alvarez-Roa, C., Nitschke, M. R., Chan, W. Y., Buerger, P., & van Oppen, M. JH. (2024). Pushing the limits: expanding the temperature tolerance of a coral photosymbiont through differing selection regimes. (bioRxiv). https://doi.org/10.1101/2024.02.11.579409
  24. Denis, H. et al. (2024) ‘Thermal tolerance traits of individual corals are widely distributed across the Great Barrier Reef’, Proceedings of the Royal Society B: Biological Sciences. Royal Society, 291(2030). doi: 10.1098/rspb.2024.0587.
  25. Naugle, M.S., Denis, H., Mocellin, V.J.L. et al. Heat tolerance varies considerably within a reef-building coral species on the Great Barrier Reef. Commun Earth Environ 5, 525 (2024). https://doi.org/10.1038/s43247-024-01649-4
  26. Nitschke MR, Abrego D, Allen CE, et al. The use of experimentally evolved coral photosymbionts for reef restoration. Trends Microbiol. Published online June 12, 2024. doi:10.1016/j.tim.2024.05.008
  27. Lockie, S., Bartelet, H. A., Ritchie, B. W., Demeter, C., Taylor, B., & Sie, L. (2024). Australians support multi-pronged action to build ecosystem resilience in the Great Barrier Reef. Biological Conservation, 299, 110789. https://doi.org/10.1016/j.biocon.2024.110789
  28. Langley, Christina & Harrison, Peter & Doropoulos, Christopher. (2024). Optimizing initial stocking densities of wild coral spawn slicks for mass production of larvae and settled corals for restoration. Restoration Ecology. 32. 10.1111/rec.14239
  29. Daly, J., Van Issum, H., Cummins, M., Evans-Illidge, E., Randall, C. J., Boyd, S., … O’Brien, J. K. (2024). Cross-cultural approach to biobanking of living coral cells on Woppaburra sea Country in the southern inshore Great Barrier Reef. Australasian Journal of Environmental Management, 1–16. https://doi.org/10.1080/14486563.2024.2401567
  30. Richards, L.S., Siems, S.T., Huang, Y. et al. The meteorological drivers of mass coral bleaching on the central Great Barrier Reef during the 2022 La Niña. Sci Rep 14, 23867 (2024). https://doi.org/10.1038/s41598-024-74181-2
  31. Yu, Jonathan; Baker, Peter; Cox, Simon; Petridis, Ross; Freebairn, Andrew; Mirza, Fareed; Thomas, Linda; Tickell, Sharon; Lemon, David; Rezvani, Omid. Provena: A provenance system for large distributed modelling and simulation workflows. In: MODSIM 2023; 09 to end of 13 Jul 2023; Darwin, Northern Territory. MSSANZ; 2023. 1-7. csiro:EP2023-0846. https://doi.org/10.36334/modsim.2023.yu90
  32. Crocker, R., Robson, B., Chinenye, A., Anthony, K. Iwanaga,T., Synthetic data for reef modelling, Ecological Informatics,Volume 82,
    2024,  https://doi.org/10.1016/j.ecoinf.2024.102698
  33. Álvarez‐Noriega, Mariana et al (2024). Spatial variation in upper limits of coral cover on the Great Barrier Reef. Global Ecology and Biogeography https://doi.org/10.1111/geb.13928
  34. Virah-Sawmy, D., Beck, F. J., Sturmberg, B. Ignore variability, overestimate hydrogen production – Quantifying the effects of electrolyzer efficiency curves on hydrogen production from renewable energy sources,
    International Journal of Hydrogen Energy, Volume 72, 2024,https://doi.org/10.1016/j.ijhydene.2024.05.360
  35. Virah-Sawmy, D., Sturmberg, B.Socio-economic and environmental impacts of renewable energy deployments: A review, Renewable and Sustainable Energy Reviews, Volume 207, 2025, https://doi.org/10.1016/j.rser.2024.11495
  36. Ani, C.J., Haller-Bull, V., Gilmour, J.P. et al. Connectivity modelling identifies sources and sinks of coral recruitment within reef clusters. Sci Rep, 14, 13564 (2024). https://doi.org/10.1038/s41598-024-64388-8 
  1. Scharfenstein, H. J.Alvarez-Roa, C.Peplow, L. M.Buerger, P.Chan, W. Y., & van Oppen, M. J. H. (2023). Chemical mutagenesis and thermal selection of coral photosymbionts induce adaptation to heat stress with trait trade-offsEvolutionary Applications00119https://doi.org/10.1111/eva.13586
  2. Matias, A. M. A.Popovic, I.Thia, J. A.Cooke, I. R.Torda, G.Lukoschek, V.Bay, L. K.Kim, S. W., & Riginos, C. (2023). Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier ReefEvolutionary Applications16293310https://doi.org/10.1111/eva.13435
  3. Wolfe, KennedyKenyon, Tania M.Desbiens, Ameliade la Motte, Kimberley, and Mumby, Peter J.2023. “ Hierarchical Drivers of Cryptic Biodiversity on Coral Reefs.” Ecological Monographs 93(3): e1586. https://doi.org/10.1002/ecm.1586
  4. Abdul Wahab, M.A., Ferguson, S., Snekkevik, V.K. et al. Hierarchical settlement behaviours of coral larvae to common coralline algae. Sci Rep 13, 5795 (2023). https://doi.org/10.1038/s41598-023-32676-4 
  5. Álvarez-Noriega, M. et al (2023) Highly conserved thermal performance strategies may limit adaptive potential in coralsProc. R. Soc. B.2902022170320221703http://doi.org/10.1098/rspb.2022.1703
  6. Fabricius KE, Crossman K, Jonker M, Mongin M, Thompson A (2023) Macroalgal cover on coral reefs: Spatial and environmental predictors, and decadal trends in the Great Barrier Reef. PLoS ONE 18(1): e0279699. https://doi.org/10.1371/journal.pone.0279699
  7. Richards, T. J.McGuigan, K.Aguirre, J. D.Humanes, A.Bozec, Y.-M.Mumby, P. J., & Riginos, C. (2023). Moving beyond heritability in the search for coral adaptive potentialGlobal Change Biology2938693882https://doi.org/10.1111/gcb.16719
  8. Lachs, L., Humanes, A., Pygas, D.R. et al. No apparent trade-offs associated with heat tolerance in a reef-building coral. Commun Biol 6, 400 (2023). https://doi.org/10.1038/s42003-023-04758-6
  9. Lippmann RB, Helmstedt KJ, Gibbs MT, Corry P (2023) Optimizing facility location, sizing, and growth time for a cultivated resource: A case study in coral aquaculture. PLoS ONE 18(3): e0282668. https://doi.org/10.1371/journal.pone.0282668
  10. Baresi, Umberto and Vella, Karen and Lockie, Stewart and Taylor, Bruce M. and Piggott-McKellar, Annah and Eberhard, Rachel, Overcoming Challenges to Large Scale Assisted Ecosystem Adaptation: A Conceptual Framework for Engagement. Available at SSRN: https://ssrn.com/abstract=4471994 or http://dx.doi.org/10.2139/ssrn.4471994
  11. Doll, P. C et al. (2023) Settlement cue selectivity by larvae of the destructive crown-of-thorns starfishBiol. Lett.192022039920220399http://doi.org/10.1098/rsbl.2022.0399
  12. Randall, C.J., Giuliano, C., Allen, K., Bickel, A., Miller, M. and Negri, A.P. (2023), Site mediates performance in a coral-seeding trial. Restor Ecol, 31: e13745. https://doi.org/10.1111/rec.13745
  13. Medcraft, C., Hernandez-Jaramillo, D. C., Harrison, L., Braga, R. C., Butcherine, P., Harrison, D. P. (2023): Size distributions of sea salt aerosols for marine cloud brightening over the Great Barrier Reef, XXVIII General Assembly of the International Union of Geodesy and Geophysics (IUGG) (Berlin 2023) https://doi.org/10.57757/IUGG23-2107
  14. Wing Yan ChanDavid RuddMadeleine JH van Oppen, Cnidarian spatial metabolomics,
  15. Scott, AbbiChartrand, KatieCurnock, MattTaylor, BruceLoder, JenniferForster, RebeccaRandall, CarlyFisher, EricDonnelly, RyanKish, Hannah, and Murgha, Brian (2023) The role of community-based Hubs in reef restoration: Collaborative monitoring at Moore Reef. In: [Presented at the Australian Marine Sciences Association Conference 2023]. From: Australian Marine Sciences Association Conference 2023: Science in Sea Country, 2-7 July 2023, Gold Coast, QLD, Australia.
  16. Gouezo, M.Doropoulos, C.Slawinski, D.Cummings, B., & Harrison, P. (2023). Underwater macrophotogrammetry to monitor in situ benthic communities at submillimetre scaleMethods in Ecology and Evolution00116https://doi.org/10.1111/2041-210X.14175
  17. Kenyon, Tania & Harris, Daniel & Baldock, Tom & Callaghan, David & Doropoulos, Christopher & Webb, Gregory & Newman, Steven & Mumby, Peter. (2023). Mobilisation thresholds for coral rubble and consequences for windows of reef recovery. 10.5194/bg-2023-2
  18. Buccheri, E., Ricardo, G.F., Babcock, R.C. et al. Fertilisation kinetics among common Indo-Pacific broadcast spawning corals with distinct and shared functional traits. Coral Reefs (2023). https://doi.org/10.1007/s00338-023-02431-2
  19. Butcherine, Peter & Tagliafico, Alejandro & Ellis, Sophia & Kelaher, Brendan & Hendrickson, Conor & Harrison, Daniel. (2023). Intermittent shading can moderate coral bleaching on shallow reefs. Frontiers in Marine Science. 10. 10.3389/fmars.2023.1162896
  20. Hernandez-Jaramillo, D. C., Medcraft, C., Braga, R. C., Rosenfeld, D., Harrison, D. (2023): Estimating the portion of Marine Cloud Brightening sea-salt aerosols that activate when incorporated into low-lying marine clouds: preliminary results, XXVIII General Assembly of the International Union of Geodesy and Geophysics (IUGG) (Berlin 2023).
    https://doi.org/10.57757/IUGG23-2669
  21. Nicole Shumway, Rose Foster, Brian Head, Pedro Fidelman, Policy solutions needed for the future of coral reefs, BioScience, 2023;, biad092, https://doi.org/10.1093/biosci/biad092
  22. Turnlund, A.C., Vanwonterghem, I., Botté, E.S. et al. Linking differences in microbial network structure with changes in coral larval settlement. ISME COMMUN. 3, 114 (2023). https://doi.org/10.1038/s43705-023-00320-x 
  23. Remmers, T., Grech, A., Roelfsema, C. et al. Close-range underwater photogrammetry for coral reef ecology: a systematic literature review. Coral Reefs (2023). https://doi.org/10.1007/s00338-023-02445-w 
  24. Randall, C.J., Giuliano, C., Stephenson, B. et al. Larval precompetency and settlement behaviour in 25 Indo-Pacific coral species. Commun Biol 7, 142 (2024). https://doi.org/10.1038/s42003-024-05824-3 
  25. Meziere, ZoePopovic, IvaPrata, KatharineRyan, IsobelPandolfi, John, and Riginos, Cynthia (2024). Exploring coral speciation: Multiple sympatric Stylophora pistillata taxa along a divergence continuum on the Great Barrier Reef. Evolutionary Applications 17 (1) ARTN e13644 e13644https://doi.org/10.1111/eva.13644
  26. Eckert, C.; Monteforte, K.I.; Harrison, D.P.; Kelaher, B.P. Exploring Meteorological Conditions and Microscale Temperature Inversions above the Great Barrier Reef through Drone-Based Measurements. Drones 20237, 695. https://doi.org/10.3390/drones7120695
  27. Hernandez-Jaramillo, D.C. et al (2023) Evaporative Cooling Does Not Prevent Vertical Dispersion of Effervescent Seawater Aerosol for Brightening Clouds. Environmental Science & Technology 2023 57 (49), 20559-20570. DOI: 10.1021/acs.est.3c04793

  28. Chan WY, Meyers L, Rudd D, Topa SH, van Oppen MJH. Heat-evolved algal symbionts enhance bleaching tolerance of adult corals without trade-off against growth. Glob Chang Biol. 2023 Dec;29(24):6945-6968. doi: 10.1111/gcb.16987. Epub 2023 Nov 1. PMID: 37913765.
  1. Daly, J., Hobbs, R.J., Zuchowicz, N. et al. Cryopreservation can assist gene flow on the Great Barrier Reef. Coral Reefs 41, 455–462 (2022). https://doi.org/10.1007/s00338-021-02202-x 
  2. Doropoulos C, Roff G (2022) Coloring coral larvae allows tracking of local dispersal and settlement. PLoS Biol 20(12): e3001907 
  3. Howells, E.J., Bay, L.K., Bay, R.A. (2022). Identifying, Monitoring, and Managing Adaptive Genetic Variation in Reef-Building Corals under Rapid Climate Warming. In: van Oppen, M.J.H., Aranda Lastra, M. (eds) Coral Reef Conservation and Restoration in the Omics Age. Coral Reefs of the World, vol 15. Springer, Cham. https://doi.org/10.1007/978-3-031-07055-6_4 
  4. Liu, F., Mao, F., Rosenfeld, D. et al. Opposing comparable large effects of fine aerosols and coarse sea spray on marine warm clouds. Commun Earth Environ 3, 232 (2022).
  5. McLeod IM, Hein MY, Babcock R, Bay L, Bourne DG, Cook N, et al. (2022) Coral restoration and adaptation in Australia: The first five years. PLoS ONE 17(11): e0273325
  6. Maire J, Buerger P, Chan WY, Deore P, Dungan AM, Nitschke MR, van Oppen MJH. Effects of Ocean Warming on the Underexplored Members of the Coral Microbiome. Integr Comp Biol. 2022 Dec 30;62(6):1700-1709.
  7. Matias, A.M., Popovic, I., Thia, J.A., et al. Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef Evolutionary Applications (2022) https://doi.org/10.1111/eva.13435 
  8. Randall, C., Giuliano, C., Allen, K. et al Site mediates performance in a coral-seeding trial. Restoration Ecology (2022) https://doi.org/10.1111/rec.13745
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  12. Tagliafico A, Baker P, Kelaher B, Ellis S and Harrison D (2022) The Effects of Shade and Light on Corals in the Context of Coral Bleaching and Shading Technologies. Front. Mar. Sci. 
  13. Thatcher C, Høj L, Bourne DG. Probiotics for coral aquaculture: challenges and considerations. Curr Opin Biotechnol. 2022 Feb;73:380-386. doi: 10.1016/j.copbio.2021.09.009. Epub 2021 Nov 5. PMID: 34749049. 
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  3. Gibbs, M., Newlands, M., (2021) Restoration heralds’ new management challenges for coral reefsMarine Policy136, https://doi.org/10.1016/j.marpol.2021.104911. 
  4. Gibbs, M. (2021) Technology requirements, and social impacts of technology for at-scale coral reef restorationTechnology in Society, 66, https://doi.org/10.1016/j.techsoc.2021.101622 
  5. Gibbs, M.T. Developing a regional-scale reef restoration activity for the tropics. Reg Environ Change 21, 99 (2021). https://doi.org/10.1007/s10113-021-01843-6 
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  12. Zuchowicz, N., Daly, J., Bouwmeester, J. et al. Assessing coral sperm motility. Sci Rep 11, 61 (2021). https://doi.org/10.1038/s41598-020-79732-x 
  1. Anthony KRN, Helmstedt KJ, Bay LK, Fidelman P, Hussey KE, Lundgren P, et al. (2020) Interventions to help coral reefs under global change—A complex decision challenge. PLoS ONE 15(8): e0236399. 
  2. Baird ME, Green R, Lowe R, Mongin M, Bougeot E (2020) Optimising cool-water injections to reduce thermal stress on coral reefs of the Great Barrier Reef. PLoS ONE 15(10): e0239978. https://doi.org/10.1371/journal.pone.0239978
  3. Ceccarelli DM, McLeod IM, Boström-Einarsson L, Bryan SE, Chartrand KM, Emslie MJ, et al. (2020) Substrate stabilisation and small structures in coral restoration: State of knowledge, and considerations for management and implementation. PLoS ONE 15(10): e0240846. 
  4. Randall, C. J., Negri, A. P., Quigley, K. M., Foster, T., Ricardo, G. F., Webster, N. S., Bay, L. K., Harrison, P. L., Babcock, R. C., & Heyward, A. J. (2020). Sexual production of corals for reef restoration in the Anthropocene. Marine Ecology Progress Series635, 203-232.
  5. Randall, C.J., Speaks, J.E., Lager, C. et al. Rapid counting and spectral sorting of live coral larvae using large-particle flow cytometry. Sci Rep 10, 12919 (2020). 
  6. Sivapalan M, Bowen J (2020) Decision frameworks for restoration & adaptation investment–Applying lessons from asset-intensive industries to the Great Barrier Reef. PLoS ONE 15(11): e0240460. 
  1. Fidelman, P., McGrath, C., Newlands, M., et al. Regulatory implications of coral reef restoration and adaptation under a changing climate. Environmental Science & Policy 100, (2019). 
  2. Randall, C.J., Giuliano, C., Mead, D. et al. Immobilisation of living coral embryos and larvae. Sci Rep 9, 14596 (2019).